tools_smoove.cwl

Documentation for smoove.cwl

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Overview

Run Smoove v0.2.7

Docker Requirement

brentp/smoove:v0.2.7

Inputs

Name	Label	Description	Type	Secondary Files
bams		Array of bams to run through lumpy, can be single or small cohort	File[]
cohort_name		Used for naming the output file	string?
reference		Reference used to generate the bams	['string', 'File']	['.fai', '^.dict']
exclude_regions		Bed file used to exclude regions	File?

Outputs

Name	Label	Description	Type	Secondary Files
output_vcf			File	['.csi']