tools_hla_consensus.cwl

Documentation for hla_consensus.cwl

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Overview

Script to create consensus from optitype and clinical HLA typing

Docker Requirement

python:3.7.4-slim-buster

Inputs

Name	Label	Description	Type	Secondary Files
hla_source_mode			{'type': 'enum', 'symbols': ['consensus', 'clinical_only']}
optitype_hla_alleles			string[]
clinical_mhc_classI_alleles			string[]?
clinical_mhc_classII_alleles			string[]?

Outputs

Name	Label	Description	Type	Secondary Files
consensus_alleles			string[]
hla_call_files			Directory