tools_duphold.cwl

Documentation for duphold.cwl

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Docker Requirement

mgibio/duphold-cwl:0.1.5

Inputs

Name	Label	Description	Type	Secondary Files
bam		aligned bam/cram file	File
output_vcf_name		output vcf file name	string?
reference		reference used to align bam	['string', 'File']	['.fai', '^.dict']
snps_vcf		snps vcf file to annotate hom/het variant counts within sv	File?
sv_vcf		sv vcf file to annotate	File

Outputs

Name	Label	Description	Type	Secondary Files
annotated_sv_vcf			File