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@krishnanlab

Krishnan Lab

Laboratory for Computational Biology and Biomedical Data Science
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  1. PecanPy PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    Python 176 25

  2. txt2onto txt2onto Public

    Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

    Python 28 7

  3. teaching teaching Public

    Courses & workshops led by members of the Krishnan Lab.

    Jupyter Notebook 24 19

  4. obnb obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    Python 22 2

  5. PyGenePlexus PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    Python 21 3

  6. RNAseq_coexpression RNAseq_coexpression Public

    In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.

    HTML 15 4

Repositories

Showing 10 of 39 repositories
  • meta-hq Public

    A platform for harmonizing and distributing community-curated high-quality metadata of public omics samples and datasets.

    krishnanlab/meta-hq's past year of commit activity
    Python 3 BSD-3-Clause 1 7 0 Updated Sep 11, 2026
  • meta2onto Public

    Frontend and backend for the meta2onto project

    krishnanlab/meta2onto's past year of commit activity
    Python 0 BSD-3-Clause 0 1 1 Updated Sep 3, 2026
  • obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    krishnanlab/obnb's past year of commit activity
    Python 22 MIT 2 60 7 Updated Aug 31, 2026
  • pydab Public

    A _blazingly fast_ Python package for modifying and converting DAB files

    krishnanlab/pydab's past year of commit activity
    Python 3 MIT 0 3 6 Updated Aug 31, 2026
  • PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    krishnanlab/PyGenePlexus's past year of commit activity
    Python 21 3 4 7 Updated Aug 17, 2026
  • multiomics-embedding Public
    krishnanlab/multiomics-embedding's past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Aug 7, 2026
  • PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    krishnanlab/PecanPy's past year of commit activity
    Python 176 BSD-3-Clause 25 17 (1 issue needs help) 8 Updated Jul 13, 2026
  • dis-sex-imbalance Public

    Public repo for sex metadata imbalance project

    krishnanlab/dis-sex-imbalance's past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jul 13, 2026
  • .github Public
    krishnanlab/.github's past year of commit activity
    Python 0 BSD-3-Clause 0 0 26 Updated Jun 1, 2026
  • icepop Public

    public repo for icepop

    krishnanlab/icepop's past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated May 12, 2026
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