Issues

IDNotExistsError when trying to use NegativeGeneratorHypergeom
krishnanlab/obnb#504 · opened on Feb 3, 2025
Mondo Ontology not downloading
krishnanlab/obnb#503 · opened on Feb 3, 2025
create hierarchical splitter
krishnanlab/obnb#501 · opened on Nov 21, 2024
create term hold-out scenario.
krishnanlab/obnb#498 · opened on Sep 18, 2024
1
HPO creates empty label set collection
krishnanlab/obnb#497 · opened on Aug 26, 2024
OboTermIncompleteError when processing mondo in specific directory
krishnanlab/obnb#496 · opened on Jul 31, 2024
2
multiple connected components in mondo ontology
krishnanlab/obnb#495 · opened on Jul 31, 2024
Option to fall back to downloading from latest if current or the version provided is not available.
krishnanlab/obnb#486 · opened on Dec 6, 2023
Archive more adata options
krishnanlab/obnb#485 · opened on Dec 6, 2023
Remove obselete terms in ontologies (filtering)
krishnanlab/obnb#483 · opened on Nov 27, 2023
Add option for weighted to be inferred (SparseGraph from npz, etc.)
krishnanlab/obnb#463 · opened on Aug 20, 2023
Potentially issue when saving directed edge list (compact..)
krishnanlab/obnb#462 · opened on Aug 16, 2023
Combine .get_y and .split; consolidate supervised and gnn trainers regarding handling of negatives
krishnanlab/obnb#409 · opened on Apr 11, 2023
1
Add progress bar to restrict_to_branch
krishnanlab/obnb#384 · opened on Feb 14, 2023
Make a dense mode for loading graph from CX
krishnanlab/obnb#345 · opened on Jan 13, 2023
Add link to data source webpage, and to NDEx when appliacble
krishnanlab/obnb#344 · opened on Jan 12, 2023
Implement DGL dataloader
krishnanlab/obnb#343 · opened on Jan 12, 2023
Add networkx as a choice of graph backend
krishnanlab/obnb#340 · opened on Jan 12, 2023
Display time left before retrying
krishnanlab/obnb#312 · opened on Oct 2, 2022
Improve data release
krishnanlab/obnb#292 · opened on Sep 9, 2022 · v0.1.0 rc
Set up mechanism to auto update test data stats for new data release
krishnanlab/obnb#291 · opened on Sep 9, 2022
Log check point stats after each filtering step to file (currently only log to screen)
krishnanlab/obnb#290 · opened on Sep 9, 2022
Add summary sheet for data release and upload to archive along with data in each data release
krishnanlab/obnb#289 · opened on Sep 9, 2022
Ubiquitous entity filtering based on percentage of occurance
krishnanlab/obnb#288 · opened on Sep 9, 2022
Negative mask
krishnanlab/obnb#287 · opened on Sep 9, 2022