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Allow both -R/-r and -F #32

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Allow both -R/-r and -F #32

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fce91b8
fix type/redundancy (-r/-R was repeated in error message)
bpow May 22, 2020
6f12a69
Allow both -R/-r and -F to be used
bpow May 22, 2020
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12 changes: 1 addition & 11 deletions kin.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -321,19 +321,9 @@ int kin_main(int argc, char* argv[])
assert(min_freq>=0 && min_freq<=1);
if((!targets.empty() && !regions.empty()) )
{
cerr<<"ERROR: -r/-R and -r/-R are incompatible"<<endl;
cerr<<"ERROR: -t/-T and -r/-R are incompatible"<<endl;
exit(1);
}
if(!frq_file.empty() && !regions.empty())
{
cerr<<"ERROR: -F and -R/-r are incompatible!"<<endl;
exit(1);
}
if(!frq_file.empty() && regions.empty())
{
regions=frq_file;
regions_is_file=true;
}
if(frq_file.empty())
{
cerr<<"No frequency VCF provided (-F). Allele frequencies will be estimated from the data."<<endl;
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