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Allow both -R/-r and -F#32
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There doesn't seem to be any reason not to allow analysis from a freq_file while also restricting to certain regions. This also removes the auto-usage of the frq_file as the regions in bcf_sr, which works around some unused SNPs as described in Illumina#29
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This addresses #31 by removing the code preventing -r/-R and -F from both being used in kin, and also removes the default of using the
frq_fileas theregionsfor bcf synced reader.The prior behavior would still be available by specifying the same file as both
-Rand-F.Bonus commit: fixes a typo in an error message.