XPS reader: update to new NXmpes after refactor - #207

Merged

lukaspie merged 95 commits into

206-xps-reader-nxmpes-update

Jan 22, 2024

Commits on Jan 8, 2024

Definitions upgraded to latest mpes-refactor
domna
committed
9f8fe41

Commits on Jan 11, 2024

Adapt vscode settings and update definitions, again
domna
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b86a5fe

Commits on Jan 15, 2024

Commits on Jan 17, 2024

add detector data reading in SLE XPS config
lukaspie
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be523d0
handle datetime writing in XPS reader
lukaspie
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ea1cfdd
temporary add old XPS config files
lukaspie
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c78f831
Merge branch '208-logger-level' into 206-xps-reader-nxmpes-update
lukaspie
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0e6f541
update XPS config template
lukaspie
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837b104
change commented SLE config file
lukaspie
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ff69cd7
revert changes to logger for now
lukaspie
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525f5d9
update definitions to mpes-fixes branch
lukaspie
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b53dcb0
Updates definitions
domna
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781826b
Updates config file
domna
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26841e4
Use nested config file structure
domna
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872fa05
flatten_json cleaned up
domna
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9a3246b
Updates definitions
domna
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4d469fa

Commits on Jan 18, 2024

Renames DATA[data] to just data
domna
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6e56b02
Use beam_TYPE and source_TYPE
domna
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e72f25e
Add flag to reatin link dicts for flatten_json
domna
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fa4e27f
Properly resolve upper/lower case group fields
domna
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669dc52
Fixes a lookup error when keys have been filled in template with a different name
sherjeelshabih
committed
faa2792
Fixes the case where the reader sends back a template entry with the concept name included
sherjeelshabih
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7514c1d
Correct coeffs path for raw data file
domna
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fc4b034
add unit parsing to XPS SLE reader
lukaspie
committed
697a86d
Merge branch 'mpes-reader-update' into 206-xps-reader-nxmpes-update
lukaspie
committed
cb29980
use nested config file in XPS SLE reader
lukaspie
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920fb28
read nested configs in XPS reader
lukaspie
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0db2ddb
Fix path in data dict test
domna
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57a3900
Update mpes reference file
domna
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c9142e9
Updates reference nexus log
domna
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adb6926
Merge branch 'master' into mpes-reader-update
domna
authored
7c07f35
typo fixes in XPS file parser
lukaspie
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1b939a2
Fix nexus regression file
domna
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f890df0
Don't use removeprefix to support py3.8
domna
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d8a8b36
Move pressure_gauge to correct location
domna
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96e40a1
Corrects link to pressure_gauge
domna
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efb56e8
Updates reference mpes test log
domna
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5b45780
Updates path for eln mapping
domna
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fa1db7d
Fixes eln mapping
domna
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27fe1b8
Skip test for xps reader
domna
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343cd54
Fix typos
domna
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79d845b
Updates generated eln files
domna
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9200ef3
Fix undocumented @units if key is documented
domna
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5f25fb2
Updates mpes reference file
domna
committed
eda5262

Commits on Jan 19, 2024

Removed applied fields in calibrations
domna
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9140ff3
Removed photon_energies from source
domna
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5ba4f66
Nest electronanalyser under instrument
domna
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3a3f86f
Use momentum_resolution and spatial_resolution as named concepts
domna
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31f71fe
Fix eln mapping for spatial and momentum resolution in electronanalyser
domna
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e780737
Updates mpes reference file
domna
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44d94e7
Renamings
domna
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689a0ee
Renamings in NXsample
domna
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116f099
Properly deal with undocumented @units as discussed w/ @sherjeelshabih
domna
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279ba0e
Updates mpes reference file
domna
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3afb459
Correctly map chemical formula
domna
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3b04d23
restructure xps sle config file
lukaspie
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591e87f
proper parsing of calibration data and transmission function
lukaspie
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467b163
add @default to electronanalyser
lukaspie
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e1f13c5
Adds additional mappings
domna
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73728f7
remove detector test links from XPS config file
lukaspie
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e2cc867
major update to metadata parsing in basic XPS reader
lukaspie
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bc521f8
Merge branch 'mpes-reader-update' into 206-xps-reader-nxmpes-update
lukaspie
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f0eb404
mypy fixes
lukaspie
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b630d2e
correct parsing of XPS detector data
lukaspie
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9eee7a3
link energy data from calibration data
lukaspie
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1c00dd5
proper writing of NXdata field in XPS reader
lukaspie
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52fdde4
remove unneeded config file
lukaspie
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821fc07

Commits on Jan 21, 2024

use beam_TYPE in config file
lukaspie
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f895a85
make template config file nested
lukaspie
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120d40c
update XPS reader convert dict
lukaspie
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c943452
update config for XPS XY reader
lukaspie
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6d12f51
update XPS SLE config file
lukaspie
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a92c78d
update SPECX XY config
lukaspie
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85a81a2
update Scienta txt config
lukaspie
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dc71664
add missed pre-commit fix
lukaspie
committed
89632bf

Commits on Jan 22, 2024

Allow Pathobject for json file path
domna
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ec84033
Merge branch 'master' into 206-xps-reader-nxmpes-update
domna
authored
d207d60
Allow paths in `parse_flatten_json`, too
domna
committed
05a8755
Re-enable xps reader in tests
domna
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e669e40
Fix mypy
domna
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741cea4
Merge branch 'master' into 206-xps-reader-nxmpes-update
lukaspie
committed
3ccdf04
Merge branch '206-xps-reader-nxmpes-update' of github.com:FAIRmat-NFDI/pynxtools into 206-xps-reader-nxmpes-update
lukaspie
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2aa1d74
update definitions
lukaspie
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19cf050
remove logger
lukaspie
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2032920
update definitions to current fairmat branch
lukaspie
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8b970e3
mapping fix in XPS SLE reader
lukaspie
committed
0d87135
read analyser voltage range in XPS SLE reader
lukaspie
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9c1290a
update XPS xml reader and tests file
lukaspie
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64212f4
allow for direct parsing of energy from data field
lukaspie
committed
2f9242c
Fix energy reading in XPS reader
lukaspie
committed
2d0baa7