Tm 690 fix slowness - #50

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rlreamy wants to merge 201 commits into

tranSMART-Foundation:masterfrom

Kretzler-Lab:TM-690_FixSlowness

Commits on Nov 29, 2016

Fix for ui autocomplete

dennyverbeeck
authored and
Ruslan Forostianov
committed
dc54db8

Commits on Dec 12, 2016

version release 16.2
Peter Rice
committed
04e906f

Commits on Dec 13, 2016

application version 16.2
Peter Rice
committed
b66ea48

Commits on Dec 14, 2016

updated browse delete study/program with children messages
Peter Rice
committed
ed40d77
include GWAS-plink plugin
Peter Rice
committed
39c15bb
simple version number
Peter Rice
committed
9b481cc

Commits on Dec 15, 2016

Escape collision of jq versions on the qurypanel.
Ruslan Forostianov
committed
fbf6ab3

Commits on Dec 22, 2016

Fix TRANSREL-153: ignore empty string variable values
Peter Rice
committed
872abac

Commits on Jan 2, 2017

updated SmartR version
sherzinger
committed
d8533e6
Merge pull request #207 from transmart/transmart-SmartR
sherzinger
authored
68c01cf

Commits on Jan 3, 2017

use standard email contact for uploadData
Peter Rice
committed
48fe62a
unique name for activateTab in datasetExplorer
Peter Rice
committed
03c0a77
browserDetect script in case of future version issues
Peter Rice
committed
b134ab8

Commits on Jan 4, 2017

Update BuildConfig.groovy
sherzinger
authored
b3012ee

Commits on Jan 23, 2017

Merge branch 'master' of github.com:transmart/transmartApp
Peter Rice
committed
ee542ce
rename activateTab to be unique
Peter Rice
committed
e1645c3
Catch null and empty variable params
Peter Rice
committed
37359c7
browser version detect code in case of need
Peter Rice
committed
f9b2cb1
Merge master branch
Peter Rice
committed
8b3968c

Commits on Feb 2, 2017

Fixed restore comparison from workspace, for clinical and highdimensional concepts.
dennyverbeeck
committed
bba635f

Commits on Feb 3, 2017

Fixing an issue linked with SmartR importation of another version of jQuery: after a click on "Advanced Workflow", we could no more use the "Clear" button of "Active Filters", nor click on the resu…
anthony-o
committed
2eed677
Merge pull request #208 from dennyverbeeck/fix/restore-comparison
Peter Rice
authored
ae1cdae
Hidome Ffature: when search term left empty, you get a 'no-value' type filter. I.e. match all subjects who have the high dimensional concept (a.k.a. the original pre-Hidome behavior)
dennyverbeeck
committed
acb4a7a
Merge pull request #210 from dennyverbeeck/feature/hidome-novalue
Peter Rice
authored
42a4fbe
Merge pull request #209 from anthony-o/fix-search-issues-involving-jquery
Peter Rice
authored
41fac62
Catch empty search terms list
Peter Rice
committed
a362123
name of xnat import enable parameter
Peter Rice
committed
24b25da
xnat import enable parameter
Peter Rice
committed
3b95368
typo in error message
Peter Rice
committed
0f9a306

Commits on Feb 5, 2017

jQuery Noconflict updates; variable name typo
Peter Rice
committed
020a20d

Commits on Feb 8, 2017

Fix in repopulate filter window that caused not being able to create new high dimensional queries.
dennyverbeeck
committed
9d69e32
Add button for 'No filter' option in high dimensional data instead of clicking ok with no filter, as this is not clear to users.
dennyverbeeck
committed
349727c
Cosmetic change to query display
dennyverbeeck
committed
d0d67b4
Merge pull request #212 from dennyverbeeck/fix/TRANSREL-168
Peter Rice
authored
a80f09e
Merge pull request #211 from dennyverbeeck/fix/TRANSREL-169
Peter Rice
authored
b70e5a6

Commits on Feb 9, 2017

Fix for using 'No filter' when dropping high dimensional concept into summary statistics or grid view
dennyverbeeck
committed
1bf36e0

Commits on Mar 1, 2017

Fixes for HiDome
dennyverbeeck
committed
f6931c9
Merge branch 'fix/TRANSREL-168' into fix/hidome-fixes
dennyverbeeck
committed
f7438f6
Merge pull request #214 from dennyverbeeck/fix/hidome-fixes
Peter Rice
authored
960c02c
Fix an issue in Workspace (saved queries)
dennyverbeeck
committed
c69d19e
Merge pull request #215 from dennyverbeeck/fix/display-query-workspace
Peter Rice
authored
9302ccc

Commits on Mar 9, 2017

restore gene list functionality
Peter Rice
committed
8659ebe
fix for 1000 patient query in oracle from 17.1
Peter Rice
committed
e0c3636
Convert Oracle CLOB to parse XML
Peter Rice
committed
0097380
move AS to be accepted as SQL syntax on Oracle
Peter Rice
committed
d0b2606

Commits on Mar 13, 2017

Merge remote-tracking branch 'transmart/master' into release-16.2
Peter Rice
committed
4852fbb
GenePatternFiles class public
Peter Rice
committed
38327be
Merge remote-tracking branch 'transmart/master' into release-16.2
Peter Rice
committed
f39c141

Commits on Mar 16, 2017

Commits on Mar 17, 2017

Merge pull request #216 from dennyverbeeck/master
Peter Rice
authored
ca2c689
Merge remote-tracking branch 'transmart/master' into release-16.2
Peter Rice
committed
81bbab2
correcting a few typos
Peter Rice
committed
3ff36f4

Commits on Mar 22, 2017

Add pretty names for probeId and transcriptId
dennyverbeeck
committed
d059b55

Commits on Mar 31, 2017

release-16.1-TraIT fixes
Ruslan Forostianov
committed
383c7a7

Commits on Apr 7, 2017

Browse fix for studies loaded below c_hlevel 1
Peter Rice
committed
2fb86ec
Merge pull request #217 from dennyverbeeck/feature/hidome
Peter Rice
authored
6d1b8fc
Merge pull request #218 from transmart/release-16.1-TraIT-fixes
Peter Rice
authored
17bfc70
Merge branch 'master' of github.com:transmart/transmartApp
Peter Rice
committed
956244b

Commits on Apr 19, 2017

Merge remote-tracking branch 'transmart/master' into release-16.2
Peter Rice
committed
5ecc8e5
Fix for probeid genesignatures
Peter Rice
committed
4b17ab1
redisplay programs after 'delete program'
Peter Rice
committed
38c3188
Option ui.jirareport.hide to hide 'report a bug' button
Peter Rice
committed
8607434
fix for 'delete program'; fix function name spellings
Peter Rice
committed
889f243
Merge remote-tracking branch 'transmart/master' into release-16.2
Peter Rice
committed
14784c5
remove console.log message
Peter Rice
committed
5916266
Merge remote-tracking branch 'transmart/master' into release-16.2
Peter Rice
committed
75d78ca

Commits on May 24, 2017

Fix typos in accessLog message
Peter Rice
committed
843bcff
Make gridview column label unambiguous
Peter Rice
committed
8953388
Merge remote-tracking branch 'transmart/master' into release-16.2
Peter Rice
committed
3a25179

Commits on Oct 27, 2017

TM-152: Data attestion page
zwright
committed
0c990b2
TM-152: Data attestion page null checks
zwright
committed
e2992c8

Commits on Oct 30, 2017

TM-152: Quick start link
zwright
committed
0f01c51
TM-152: Page title reset after Genome Browser
zwright
committed
d3a7ec3
TM-152: Fix jquery for closing utilities menu
Becky Reamy
committed
f5da6f4

Commits on Oct 31, 2017

TM-152: MOTD and config customizations
zwright
committed
8f6a08a
TM-152: Logos
KingstonDuo
committed
72daae3
TM-152: Added emails to configs
kingstonduo@umich.edu
committed
be6d991
TM-152: Contact emails
KingstonDuo
committed
5b3fb72
TM-152: App titles
KingstonDuo
committed
baf7c9e

Commits on Nov 6, 2017

TM 152: Platform dropdown
KingstonDuo
committed
aaee4ec

Commits on Nov 7, 2017

TM-152: Don't return unauthorized studies
KingstonDuo
committed
1ecdc43

Commits on Nov 17, 2017

TM 152: Across Trials security fixes
KingstonDuo
committed
5b383d6

Commits on Nov 21, 2017

TM 234: Move code from HTML to JS
KingstonDuo
committed
2880ce9

Commits on Nov 22, 2017

TM-234: Check before clearing data grid element
KingstonDuo
committed
043ff56

Commits on Nov 30, 2017

TM 234: Remove test file
KingstonDuo
committed
68cd925
Merge pull request #1 from Kretzler-Lab/TM_234_16_2_Bugs
KingstonDuo
authored
cd3f0ba

Commits on Dec 1, 2017

TM 152: Across Trials tooltips, search limit
KingstonDuo
committed
01a87ec
Merge pull request #2 from Kretzler-Lab/TM-152_16_2_Upgrade
rlreamy
authored
9e555b9

Commits on Dec 4, 2017

Commits on Dec 5, 2017

TM-226: Update Jfree chart library
KingstonDuo
committed
d72584f
TM-226: Add new jFree jars
KingstonDuo
committed
f35439d
TM-226: Fixed missing user error
KingstonDuo
committed
cfd7393
Merge pull request #5 from Kretzler-Lab/TM-226_Chart_Tooltips
rlreamy
authored
5b101e3
TM-229: Add labels to numeric concept charts
KingstonDuo
committed
7273c04
Merge pull request #6 from Kretzler-Lab/TM-229_Axis_Labels
rlreamy
authored
8b8b9f5
Make tranSMART build on my machine
kingstonduo@umich.edu
committed
f20fce6

Commits on Dec 7, 2017

TM-245: Remove the em tag so that the user can click on the number and drag
kingstonduo@umich.edu
committed
9e6ef8b

Commits on Dec 12, 2017

TM-246: Adding changes so we can work on Zachs machine
kingstonduo@umich.edu
committed
b8c86ba
TM 246: Sort by category
KingstonDuo
committed
ec011e5
Merge pull request #8 from Kretzler-Lab/TM-246_RaceSummaryStatsSortOrder
rlreamy
authored
32ba2fd
Merge pull request #7 from Kretzler-Lab/TM_245_GrabTermsIssue
zwright
authored
cf08b5c
TM 247: Put pvalues in scientific notation
KingstonDuo
committed
e89f9df

Commits on Dec 13, 2017

TM-247: Styling the stats
KingstonDuo
committed
8ff202e
TM-247: Vertical table
KingstonDuo
committed
22f59ec
TM-225: Use concept name for subset
KingstonDuo
committed
bdee9c4

Commits on Dec 14, 2017

Commits on Dec 15, 2017

Commits on Dec 19, 2017

TM-86: Use font-awesome instead
KingstonDuo
committed
65db92e
Merge pull request #12 from Kretzler-Lab/TM-86_Label_Search_Box
rlreamy
authored
7b9c092

Commits on Dec 21, 2017

TM-57: Make the labels on th pie chart readable
kingstonduo@umich.edu
committed
5867a96

Commits on Dec 22, 2017

TM-57: Make labels easier to read in bar charts
kingstonduo@umich.edu
committed
286e3b5
TM-222: Modify config to use relative path
kingstonduo@umich.edu
committed
6c52e45

Commits on Jan 2, 2018

TM-242: Hide upload data link
kingstonduo@umich.edu
committed
a63ec75
Merge pull request #14 from Kretzler-Lab/TM-222_FixHelpLink
zwright
authored
3878744
Merge pull request #13 from Kretzler-Lab/TM-57_FixVizLabels
zwright
authored
f9ee76e

Commits on Feb 1, 2018

TM-258: Formalize names
KingstonDuo
committed
6e13169

Commits on Feb 2, 2018

TM-272: Remove autocomplete code
KingstonDuo
committed
cebfe93
TM-272: Tweaks to get rid of errors
KingstonDuo
committed
a534a3d
TM-272: More tweaks to get rid of errors
KingstonDuo
committed
e469143
Merge pull request #15 from Kretzler-Lab/TM-258_Formalize_Stat_Words
rlreamy
authored
2958d2e
TM-271: Terms -> Concepts
KingstonDuo
committed
7db405f
TM-285: Disable GWAS
KingstonDuo
committed
50a02fb
Merge pull request #16 from Kretzler-Lab/TM-272_Remove_Autocomplete
rlreamy
authored
68b54ba
Merge pull request #17 from Kretzler-Lab/TM-271_Drag_Terms_Label
rlreamy
authored
8c9d9b9
Merge pull request #18 from Kretzler-Lab/TM-285_Disable_GWAS
rlreamy
authored
7ceb27e

Commits on Feb 5, 2018

Commits on Feb 6, 2018

TM-217: Basic monitoring page
KingstonDuo
committed
565b121
TM-259: Added a couple of divs and moved all subset stats boxes into one cell
kingstonduo@umich.edu
committed
e71f53e
TM-259: Make subset boxes closer on big screen
kingstonduo@umich.edu
committed
5b9cf05
TM-214: Updated the version number to show that we have modified the app
kingstonduo@umich.edu
committed
e0c1bb7
TM-217: More monitoring info
KingstonDuo
committed
ba06150

Commits on May 21, 2018

TM-227: Removed the duplicated summary graph
kingstonduo@umich.edu
committed
b77108f

Commits on May 22, 2018

Merge pull request #24 from Kretzler-Lab/TM-227_DuplicatedSummary
zwright
authored
6358ce4

Commits on May 24, 2018

TM-299: Change the color of the box-plots to make the outliers more visible
kingstonduo@umich.edu
committed
42b31da

Commits on May 25, 2018

Merge pull request #25 from Kretzler-Lab/TM-299_BoxAndWhiskerPlotColors
zwright
authored
65657e0
TM-298: CPROBE config
KingstonDuo
committed
13e2315
TM-298: CPROBE logo
KingstonDuo
committed
5c5aaef

Commits on May 29, 2018

TM 298: New email address
KingstonDuo
committed
23da234
Merge pull request #26 from Kretzler-Lab/TM-298_CPROBE_Config
rlreamy
authored
a6e6228

Commits on Jun 1, 2018

A couple of tweaks to the config
KingstonDuo
committed
0a58cab

Commits on Jun 6, 2018

Merge pull request #27 from Kretzler-Lab/CPROBE_Config
rlreamy
authored
de074ac

Commits on Jun 8, 2018

TM 324: Updates to the Config
KingstonDuo
committed
3e59272
TM 327: Use the item!
KingstonDuo
committed
351a12b

Commits on Jun 11, 2018

Commits on Jul 24, 2018

TM-333: update help link
KingstonDuo
committed
3cab14a

Commits on Jul 25, 2018

Merge pull request #30 from Kretzler-Lab/TM-333_New_Help_Doc
rlreamy
authored
6b838ac

Commits on May 22, 2019

TM-708: Added new menu items with links
rlreamy
committed
2af08fd

Commits on May 24, 2019

Commits on May 28, 2019

TM-409: fix typo
rlreamy
committed
1edef92
TM-409: fix typo
rlreamy
committed
2cc7b37

Commits on May 29, 2019

TM-412: Initial stab at a fix
rlreamy
committed
4ff9b7b

Commits on May 30, 2019

Commits on May 31, 2019

Merge pull request #35 from Kretzler-Lab/TM-421_ChangeColorOfPoints
zwright
authored
3aa8c58
Update Config.rpc2.groovy
zwright
authored
9eb8f37

Commits on Jul 10, 2019

KPMP-435: Change front page message
zwright
committed
1b8550d
Merge pull request #36 from Kretzler-Lab/TM-435_Update_Front_Text
rlreamy
authored
cec78ec

Commits on Jan 23, 2020

TM-482: Add files to dropdown and config
zwright
committed
b75c163

Commits on Jan 24, 2020

TM-483: Try just links
zwright
committed
cdcf2e1
TM-483: Try just links with no separate tab
zwright
committed
5b3dd95

Commits on Feb 21, 2020

Merge pull request #37 from Kretzler-Lab/TM-483_File_Links
zwright
authored
53c54b4
TM-467: H3Africa config file and logo
zwright
committed
bdb16d8

Commits on Feb 24, 2020

Merge pull request #38 from Kretzler-Lab/TM-467_H3Africa_Config
rlreamy
authored
0130b81

Commits on Feb 27, 2020

TM-467: Fix email addres
zwright
committed
e08f680
Merge pull request #39 from Kretzler-Lab/TM-467_Config_Fix
rlreamy
authored
0748951

Commits on Apr 6, 2020

TM-496: Remove unused guides
zwright
committed
5b8f0a3

Commits on Apr 7, 2020

TM-496: Update data attestation
zwright
committed
4854a10

Commits on Apr 8, 2020

Merge pull request #40 from Kretzler-Lab/TM-496_Update_Config
rlreamy
authored
afdce0d

Commits on Apr 20, 2020

TM-501: Turn off exporting
zwright
committed
670ccde
Merge pull request #41 from Kretzler-Lab/TM-501_No_Export
rlreamy
authored
bee18c9

Commits on Apr 9, 2024

Update Config.curegn.groovy
rlreamy
authored
e5af828
Update Config.rpc2.groovy
rlreamy
authored
70041e6
Update Config.neptune.groovy
rlreamy
authored
9e40db8
Update Config.cprobe.groovy
rlreamy
authored
6235b3f
Update Config.h3africa.groovy
rlreamy
authored
b1ba69b
Update Config.groovy
rlreamy
authored
78fed82