NT database setup is quite slow due to upstream `makepaddedseqdb` issue

[murfalo]

Hi. Awesome work!

I have been playing around with it and noticed setting up NT is very slow because the bundled makepaddedseqdb assigns nearly all sequence data to one thread. Issue and proposed fix upstream:

• makepaddedseqdb thread imbalance on length-skewed databases soedinglab/MMseqs2#1125
• Balanced makepaddedseqdb across threads soedinglab/MMseqs2#1126

Worth incorporating the fix into Riboseek once merged?

Thanks!
Murphy + your friends in Marks lab :)

[pskvins]

Hi Murphy,
Thank you for your interest in Riboseek!

That fix looks useful.
I don't have permission to merge that fix into MMseqs2, so I'll let Martin and Milot know about it and incorporate into Riboseek as soon as possible.

Thank you!
Sukhwan Park