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soedinglab
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MMseqs2
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64-bit build to allow 4.3B+ sequences
- #1111
#1111
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martin-steinegger
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soedinglab:master
soedinglab/MMseqs2:master
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bbuschkaemper:master
bbuschkaemper/MMseqs2:master
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Jun 19, 2026
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64-bit build to allow 4.3B+ sequences
#1111
martin-steinegger
merged 13 commits into
soedinglab:master
soedinglab/MMseqs2:master
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bbuschkaemper:master
bbuschkaemper/MMseqs2:master
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Commits on May 3, 2026
Add build flag to support 64-bit ints for more sequences.
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Commits on May 5, 2026
Fix all remaining 32-bit ints to 64-bit.
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Commits on May 17, 2026
Merge branch 'soedinglab:master' into master
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Add progress to align2clust.
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73ccba0
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Commits on May 19, 2026
Fix possible race-condition in align2clust.
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Commits on May 22, 2026
Fix additional remaining 32-bit ints that might overflow.
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Commits on Jun 1, 2026
Merge branch 'soedinglab:master' into master
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Fix 32-bit usage in utility files (pairaln, offsetalignment, makepaddedsqdb, etc.).
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Commits on Jun 10, 2026
Add mmseqs linclust comparison test.
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Commits on Jun 19, 2026
Keep prefilter ids 32-bit + cap target splits at 2^32; fix default-build memory
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Keep TmpResult.id 32-bit too (complete prefilter compaction)
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Remove linclust comparison test script and its .gitignore
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Make clustersizes 32-bit by default, 64-bit under MMSEQS_INT64_IDS
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