Issues

• Potentially non-deterministic test

  bug
  sanger-tol/ascc#258 · Filter by author prototaxites opened on Oct 23, 2026

• Improving test profiles

  enhancement
  sanger-tol/ascc#256 · Filter by author DLBPointon opened on Oct 23, 2026

• Update Docs

  bug

  MediumFilter by Priority: Medium
  Task

  sanger-tol/ascc#247 · Filter by author DLBPointon opened on Oct 16, 2026
  

• Pacbio Multiplexing barcodes are out of date

  bug

  HighFilter by Priority: High
  Task

  sanger-tol/ascc#246 · Filter by author DLBPointon opened on Oct 16, 2026
  

• Move from publishDir to workflow outputs

  enhancement

  MediumFilter by Priority: Medium
  Task

  sanger-tol/ascc#242 · Filter by author DLBPointon opened on Oct 1, 2026

• Many Python scripts

  Task

  sanger-tol/ascc#240 · Filter by author DLBPointon opened on Oct 1, 2026

• RUN_Params are buggy

  bug

  HighFilter by Priority: High
  Bug

  sanger-tol/ascc#239 · Filter by author DLBPointon opened on Oct 1, 2026
  

• Update Local modules to Version topics

  enhancement
  Task

  sanger-tol/ascc#238 · Filter by author DLBPointon opened on Oct 1, 2026 · Version 1
  

• 23rd October Hackathon

  enhancement

  HighFilter by Priority: High
  Task

  sanger-tol/ascc#237 · Filter by author DLBPointon opened on Sep 24, 2026
  

• MAINTENANCE: tests only use nextflow > 26

  bug
  sanger-tol/ascc#236 · Filter by author DLBPointon opened on Sep 23, 2026
  

• README needs some TLC

  sanger-tol/ascc#232 · Filter by author tbrown91 opened on Jul 30, 2026 · Version 1

• Rely on a checkout directory for nested pipelines

  enhancement

  HighFilter by Priority: High
  sanger-tol/ascc#231 · Filter by author DLBPointon opened on Jul 9, 2026
  

• Deontaminated BED production failing to complete.

  bug
  sanger-tol/ascc#226 · Filter by author weaglesBio opened on Apr 28, 2026
  1

• args and params in workflows

  bug

  MediumFilter by Priority: Medium
  Task

  sanger-tol/ascc#217 · Filter by author DLBPointon opened on Feb 2, 2026 · Version 1
  1

• Add K-mer decomposition and Tiara to merged BTK

  enhancement
  sanger-tol/ascc#214 · Filter by author prototaxites opened on Jan 30, 2026
  3

• param.read_type needs to be different

  enhancement
  sanger-tol/ascc#213 · Filter by author DLBPointon opened on Jan 29, 2026

• Run search for organellar sequences in nuclear assembly only

  enhancement
  sanger-tol/ascc#208 · Filter by author jt8-sanger opened on Dec 12, 2025

• Oncomplete stats

  enhancement

  LowFilter by Priority: Low
  Feature

  sanger-tol/ascc#191 · Filter by author DLBPointon opened on Nov 17, 2025 · Version 1
  1

  

• Split fasta -> Blast -> merge

  1.X.Xenhancement
  Feature

  sanger-tol/ascc#186 · Filter by author DLBPointon opened on Oct 22, 2025

• Investigate BTK_Blobdir modifiers

  enhancement
  sanger-tol/ascc#174 · Filter by author DLBPointon opened on Sep 30, 2025

• Adapt the FCSGX sub-workflow to utilise chunked-dbs

  sanger-tol/ascc#171 · Filter by author DLBPointon opened on Sep 30, 2025 · Version 2

• Addition of SOURMASH subworkflow

  enhancement
  sanger-tol/ascc#170 · Filter by author DLBPointon opened on Sep 30, 2025 · Version 1.1
  

• Add meta.yml for local subworkflows

  sanger-tol/ascc#169 · Filter by author DLBPointon opened on Sep 30, 2025 · Version 1

• Can't update FCS_ADAPTOR

  Future Additions
  sanger-tol/ascc#165 · Filter by author DLBPointon opened on Sep 26, 2025
  1

  

• eachLine should be replaced with a process

  sanger-tol/ascc#153 · Filter by author DLBPointon opened on Sep 1, 2025 · Version 1
  1