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    23 repositories

    • LatoniaReID

      Public
      Yesharim et al. 2026: Hula painted frog photo re-identification
      Python
      •
      MIT License
      •0•1•0•0•Updated Jul 30, 2026Jul 30, 2026

    • terminal-bench-science-wildlife-reid

      Public
      Wildlife re-identification task for Terminal-Bench Science
      Lean
      •
      Apache License 2.0
      •0•0•0•1•Updated Jul 29, 2026Jul 29, 2026

    • VBPCApy

      Public
      Variational Bayesian PCA for incomplete data with native missingness handling, uncertainty outputs, and C++ accelerated kernels.
      Python
      •
      MIT License
      •3•0•31•0•Updated Jul 24, 2026Jul 24, 2026

    • wildlife-mask-extractor

      Public
      Find and extract any animal from photos using SAM3 text-prompted segmentation (mask / masked / cropped output). Defaults to arctic fox, works for any species.
      Python
      •0•0•0•0•Updated Jul 16, 2026Jul 16, 2026

    • AnimalCLEF-2026-sub231

      Public
      Standalone reproduction of AnimalCLEF 2026 submission sub#231 of Ram Lab.
      Python
      •
      Other
      •1•0•0•0•Updated Jun 18, 2026Jun 18, 2026

    • collective_posterior

      Public
      The collective posterior distribution for simulation-based inference
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jun 2, 2026Jun 2, 2026

    • voxspace

      Public
      Comparing acoustic and perceptual distances in vocalizations using self-supervised vocal embeddings
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • Laland1995

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 5, 2026Feb 5, 2026

    • EvolutionaryRescue

      Public
      TeX
      •0•0•0•0•Updated Apr 21, 2025Apr 21, 2025

    • miew-id

      Public
      Jupyter Notebook
      •17•0•0•0•Updated Mar 25, 2025Mar 25, 2025

    • CulturalCooperation

      Public
      Repo for: "Non-Vertical Cultural Transmission, Assortment, and the Evolution of Cooperation"
      Jupyter Notebook
      •0•2•1•1•Updated Nov 26, 2024Nov 26, 2024

    • Cultural-Clusters-and-Networks

      Public
      Program and data files for "Cultural transmission, networks, and clusters among Austronesian-speaking peoples"
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 19, 2024Sep 19, 2024

    • PrestigeBias

      Public
      Repo for: "Prestige bias in cultural evolutionary dynamics"
      Jupyter Notebook
      •0•0•0•1•Updated Jun 2, 2024Jun 2, 2024

    • chuong_et_al

      Public
      Repo for: Chuong et al. (2024) DNA replication errors are a major source of adaptive gene amplification
      evolutionbayesian-inferenceyeast
      evolutionbayesian-inferenceyeastsbievolutionary-modelsexperimental-evolution
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • cnv_sims_inference

      Public
      Repo for: Avecilla et al (2022) Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics. PL…
      evolutionbayesian-inferenceyeast
      evolutionbayesian-inferenceyeastevolutionary-modelssimulation-based-inferencechemostat
      HTML
      •
      MIT License
      •2•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • Heatrisomy

      Public
      Repo for: "Aneuploidy can be an evolutionary diversion on the path to adaptation"
      Jupyter Notebook
      •0•0•0•1•Updated Mar 3, 2024Mar 3, 2024

    • Self-Replicating-Artificial-Neural-Networks

      Public
      Evolving self-replicating artificial neural networks in a WF model over multiple GPU machines
      Jupyter Notebook
      •
      MIT License
      •1•2•0•0•Updated Jan 12, 2024Jan 12, 2024

    • revision_phenotypic_mrate

      Public
      Fork of repo for Lobinska et al, Genetics 2023 (doi:10.1093/genetics/iyad111)
      Jupyter Notebook
      •1•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • EffectiveNPI

      Public
      Repo for: Kohanovski, Obolski, Ram (2022) "Inferring the effective start dates of non-pharmaceutical interventions during COVID-19 outbreaks". IJID. doi:10.1016…
      bayesian-inferencecovid-19seir-model
      bayesian-inferencecovid-19seir-modelnon-pharmaceutical-interventions
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 14, 2022Sep 14, 2022

    • DistributedComputing

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 7, 2021Sep 7, 2021

    • ImmunePriming

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Jul 19, 2020Jul 19, 2020

    • ddeint

      Public
      Scipy-based Delay Differential Equation (DDE) solver
      Python
      •24•1•0•0•Updated Sep 27, 2019Sep 27, 2019

    • lag-modeling

      Public
      Python
      •2•0•0•0•Updated Dec 21, 2017Dec 21, 2017
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