WIP: Remove element classes - #1475

Draft

kohr-h wants to merge 136 commits into

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kohr-h:remove_element

Commits on Apr 13, 2020

Step 1: remove obvious parts of npy_tensors.py and other modules
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90434d5
Fix doctests of NumpyTensorSpace
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8e1cc44
Fix doctests in base_tensors.py, make `show` a space method
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f95bd77
Step 2: remove DiscreteLpElement and other obvious code
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12def9c
Fix doctests of DiscreteLp, make show a method of DiscreteLp
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85daddf
Fix convolution example
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68dd506
Fix scipy solvers example and some diff operators
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e1cbff1
Step 3: remove ProductSpaceElement, use np.ndarray with object dtype instead
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173a0a6
Fix DiscreteLp.__contains__
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e87036f
Probably fix diff_ops doctests
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63b2b50
Fix ProductSpace.show and example show_productspace
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4c7f14f
Step 4: Replace pspace weightings by functions
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c767169
Fix deformation operators
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5b5e011
Step 5: Remove LinearSpaceElement and its imports
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e9fb81f
Temporarily fix ProductSpace.__repr__
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08d728c
Fix deformation examples
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c6448b2
Fix space diagnostics
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31b73af
Fix default_ops doctests
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26548d6
Fix doctests in operator.py
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9cd0d11
Fix pspace element creation
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e9400f9
Fix pspace_ops doctests
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a480ed9
Fix doctests of tensor_ops.py up to weighting issue
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ce443eb
Step 6: remove remaining weighting classes
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05c919a
Remove __array_ufunc__ functions
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d71d905
Fix lp_discr.py doctests
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74e7065
Fix doctests in discr_ops.py
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53d4ff2
Fix doctests in tensor_ops.py, add weighting_type to ProductSpace
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44c352d
Remove `vector` function
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6be2e46
Fix doctests in pspace.py
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1f9f562
Fix doctests in emission.py
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6f69636
Fix doctests in geometric.py
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c9953f5
Fix doctests in misc_phantoms.py
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ebaef61
Fix doctests in noise.py
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bee4cf2
Fix doctests in transmission.py
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6bd5e2b
Fix doctests in utility.py
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97d478b
Fix doctests in default_functionals.py and proximal_operators.py
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c15d65d
Fix doctests in functional.py
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13c9c53
Fix operator default in-place call
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cdc6c30
Fix doctests in derivatives.py
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830c38c
Fix doctests in callback.py
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e9b62dd
Fix doctests in steplen.py
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d0803e0
Fix ray transform and doctests in filtered_back_projection.py
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6d35178
Fix doctests in diagnostics/operator.py
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496b957
Fix wrong weighting in PointwiseInnerAdjoint
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8e79aca
Fix Fourier transforms
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3040464
Fix fourier_trafo example
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c3db9c3
Fix wavelet_trafo example
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24f3746
Fix simple_r example
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2647c32
Fix simple_rn example
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6fe1ca8
Add space argument to CallbackShow
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3d38d2a
Fix show_1d example
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0e4137a
Fix show_2d example
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a684460
Fix show_2d_complex example
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2f5b61b
Fix show_callback example
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76536f5
Fix show_update_1d example
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13f2718
Fix show_update_2d example
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e83fe84
Fix show_update_in_place_2d example
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142fda1
Fix show_vector example
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4143a92
Rename show_examples example
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50a2151
Fix several smooth solvers
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e2d8231
Fix Rosenbrock example
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24fc079
Fix proximal_translation
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e8cc5a7
Fix proximal gradient solvers
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6f28e14
Fix proximal_gradient_denoising.py example
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22f4b06
Add _multiply and _divide to DiscreteLp
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97c0094
Allow field elements in multiply and divide
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e611fbb
Remove ufuncs from pytest_config
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a09ea15
Fix space_test unittests
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7b8d941
Remove space_utils_test unittests
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29c19a5
WIP: fix PDHG and prox ops
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24e450d
WIP: fix tensors_test unittests and weighting
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b76d577
Improve fixture printing, remove reduction fixture
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eb9612a
Fix weighted dist on NumpyTensorSpace
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93bc9c4
In tensors_test.py, remove obsolete tests and fix remaining ones
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f9a890d
Minor fixes in tensors_test
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6f55693
WIP: fix pspace element creation and pspace_test unittests
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ba41a1a
Fix wrong LinearSpace.__pow__
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e368e52
WIP: fix pspace elements and shape
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c2c18ed
Silence DeprecationWarning in testutils.py
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c28b335
Add ProductSpace.apply
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627e529
Fix/remove old pspace tests
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e005ece
ENH: implement base_space for power spaces
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637d0b0
Fix default_functionals doctests
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c2b0972
Remove product space version of matrix_representation, fix as_scipy_operator
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1e950a0
Fix pspace_ops doctests wrt array dtypes
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a769624
Fix NumpyTensorSpace __eq__ and __hash__
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a594cdb
Rework ufunc operators and functionals
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eb21915
Add back product space dtype to make ufunc_ops work
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0a4a782
Repair __repr__ of deformation operators and displacement storage
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840d3a3
Fix or xfail displacement unittests
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3037696
Warn instead of raise for unknown ufuncs
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719b762
Remove ridiculous old classes
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90f9a7d
ENH: make space methods more liberal in accepted input
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5640270
Fix some of the smooth solvers
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7fa1d69
Repair fixtures of smooth solvers tests
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4526715
Add pspace apply2 and restrict membership to object dtype
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8609a8b
Fix one remaining ufuncs occurrence
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42bbd92
Fix adam optimizer
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d5837ca
Make all_almost_equal work for object arrays
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f123ef6
Obviousl fixes to functional tests
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b991804
WIP: make functionals and prox ops work for product spaces
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9683721
Remove custom space exceptions, fix/remove obsolete tensor tests
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a719e65
Fix and clean up lp_discr_test
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76d2ded
Fix diff_ops_test
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e426057
Fix discr_ops_test
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046bfee
Fix/xfail oputils_test
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1b20430
Fix some issues in odl.operator, and fix/xfail tests in operator_test
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3413f60
Fix some bugs in tensor_ops, and fix tensor_ops_test
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998dead
Re-instantiate assign and set_zero, fix pspace_ops_test
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d3f1c20
Big cleanup (space, inner, norm, dist), make CPU projectors work
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e3158f5
Fix astra_setup_test
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1b0f26f
Fix iterative solvers and iterative_test
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d23616b
WIP: fix non-smooth solvers
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d0ede57
Implement ufuncs on product spaces
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d623bbb
Add reductions to spaces
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b7d6fc1
Port functionals to ufuncs and reductions
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fcde4fc
Fix further proximals and functionals
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f94c504
WIP: fix functionals and tests
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504297c
Fix some more functionals
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d82f272
Fix rest of default_functionals_test
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2cd4fa4
Add LinearSpace.copy method
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682a8bc
Fix proximal operators and simplify tests
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94bd49c
Fix KL cross entropy
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61aaf2b
Fix unittests in functional_test
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d2fb5fe
Fix test of forward_backward and pdhg
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7f5a2ab
Remove FunctionalLeftVectorMult, no more use for it
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c5b0671
Replace .copy() method calls by copy function calls
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b9e7387
Make PointwiseNorm.derivative a bit more efficient and readable
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b369725
Keep KL functionals from raising warnings
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ed8d70d
Extend QuadraticForm with proximal and CC with operator
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7864ab3
Improve memory efficiency of Douglas-Rachford
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eba5786
Make default_functionals tests more comprehensive
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68822b5
Misc fixes
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5a52dff
Put __all__ amendments last in __init__.py files
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756d073
Various fixes
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fed4e0b
Remove references to DiscretizedSpaceElement
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9a6aaf8

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Commits

Commits on Apr 13, 2020