Remove empty special_pairs objects in HOOMD forcefield and code CI update

[CalCraven]

PR Summary:

Removal and better testing of different special pairs handling in the GMSO Forcefield to HOOMD conversion. Any special pairs that are empty, i.e. (value is 1), so they're not treated specially, can be removed from the special pairs handling.

Also, fix many suggestions made during pre-commit from #995

PR Checklist

---

• Includes appropriate unit test(s)
• Appropriate docstring(s) are added/updated
• Code is (approximately) PEP8 compliant
• Issue(s) raised/addressed?

[CalCraven]

Can get an Error:

**ERROR**: No pairs are defined.

When performing sim.run, and this is the source. It's not actually causing any simulation issues, i.e. the simulation will run as intended, but will be nice to remove this message so users can better diagnose real errors with their setup.

    for force in forces:
        if isinstance(force, hoomd.md.special_pair.LJ):
            if len(list(force.params.items())) is 0:
                remove=True
                break
    if remove:
        forces.remove(force)
    return forces

[codecov]

Codecov Report

❌ Patch coverage is 92.10526% with 27 lines in your changes missing coverage. Please review.
✅ Project coverage is 93.17%. Comparing base (466c00b) to head (2f8fed4).

Files with missing lines	Patch %	Lines
gmso/utils/expression.py	40.00%	6 Missing ⚠️
gmso/formats/top.py	86.48%	5 Missing ⚠️
gmso/core/topology.py	92.85%	3 Missing ⚠️
gmso/external/convert_parmed.py	85.00%	3 Missing ⚠️
gmso/core/views.py	88.23%	2 Missing ⚠️
gmso/utils/conversions.py	81.81%	2 Missing ⚠️
gmso/utils/ff_utils.py	90.00%	2 Missing ⚠️
gmso/external/convert_hoomd.py	98.27%	1 Missing ⚠️
gmso/formats/mcf.py	87.50%	1 Missing ⚠️
gmso/parameterization/topology_parameterizer.py	85.71%	1 Missing ⚠️
... and 1 more

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #997      +/-   ##
==========================================
+ Coverage   93.14%   93.17%   +0.03%     
==========================================
  Files          67       67              
  Lines        8151     8174      +23     
==========================================
+ Hits         7592     7616      +24     
+ Misses        559      558       -1     

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[CalCraven]

This PR is also going to update many of the Linting issues noticed in the latest pre-commit PR.