Add Git hooks to format code automically

.clang-tidy

@@ -0,0 +1,39 @@
+---
+# AMS clang-tidy configuration
+#
+# Run manually:  clang-tidy -p build/ src/AMSlib/wf/workflow.hpp
+# Integrated via the pre-commit git hook.
+
+Checks: >
+  -*,
+  bugprone-*,
+  -bugprone-easily-swappable-parameters,
+  -bugprone-narrowing-conversions,
+  misc-*,
+  -misc-non-private-member-variables-in-classes,
+  -misc-no-recursion,
+  modernize-*,
+  -modernize-use-trailing-return-type,
+  -modernize-avoid-c-arrays,
+  -modernize-use-nodiscard,
+  performance-*,
+  readability-identifier-naming
+
+WarningsAsErrors: ''
+
+HeaderFilterRegex: 'src/AMSlib/.*'
+
+CheckOptions:
+  - key: readability-identifier-naming.ClassCase
+    value: CamelCase
+  - key: readability-identifier-naming.PrivateMemberPrefix
+    value: '_'
+  - key: readability-identifier-naming.FunctionCase
+    value: camelBack
+  - key: readability-identifier-naming.NamespaceCase
+    value: lower_case
+  - key: modernize-use-override.AllowOverrideAndFinal
+    value: false
+  - key: performance-unnecessary-value-param.AllowedTypes
+    value: 'std::shared_ptr;std::unique_ptr'
+

.githooks/pre-commit

@@ -0,0 +1,34 @@
+#!/usr/bin/env bash
+#
+# Git pre-commit hook for AMS:
+#   Runs non-mutating checks on staged C/C++ and Python files.
+#
+# Install:
+#   git config core.hooksPath .githooks
+#
+# Skip temporarily:
+#   git commit --no-verify
+#
+# Skip only clang-tidy:
+#   AMS_SKIP_TIDY=1 git commit
+#
+# Specify build directory (for compile_commands.json):
+#   export AMS_BUILD_DIR=/path/to/build
+#
+# Apply fixes explicitly:
+#   scripts/run-code-quality.sh --fix
+#
+# Requires: clang-format, clang-tidy, ruff on PATH
+# clang-tidy requires compile_commands.json (generated by cmake)
+
+set -euo pipefail
+
+REPO_ROOT=$(git rev-parse --show-toplevel)
+SCRIPT="${REPO_ROOT}/scripts/run-code-quality.sh"
+
+if [[ ! -f "$SCRIPT" ]]; then
+  echo "ERROR: missing helper script: $SCRIPT"
+  exit 1
+fi
+
+exec bash "$SCRIPT" --check --staged --fail-on-partial

CMakeLists.txt

@@ -14,7 +14,6 @@ cmake_policy(SET CMP0074 NEW)
 
 project(AMS VERSION 0.1.1 LANGUAGES CXX C)
 
-
 # NOTE: This may break some of our integrations with the applications. But flux requires > C++20, RMQ requires C++17 and although AMS does not have 
 # any restrictions on the CXX standard the application may impose those. The solution would be to compile RMQ with an older GCC version  (8) and 
 # have flux to be an external of the system environment

pyproject.toml

@@ -41,6 +41,11 @@ dependencies = [
   "flux-python>=0.75.0"
 ]
 
+[project.optional-dependencies]
+dev = [
+  "ruff",
+]
+
 [project.scripts]
 AMSBroker = "ams_wf.AMSBroker:main"
 AMSDBStage = "ams_wf.AMSDBStage:main"
@@ -56,62 +61,27 @@ AMSDeploy = "ams_wf.AMSDeploy:main"
 package-dir = {"" = "src/AMSWorkflow"}
 packages = ["ams_wf", "ams"]
 
-# Black formatting
-[tool.black]
-line-length = 120
-include = '\.pyi?$'
-exclude = '''
-/(
-      .eggs         # exclude a few common directories in the
-    | .git          # root of the project
-    | .hg
-    | .mypy_cache
-    | .tox
-    | venv
-    | _build
-    | buck-out
-    | build
-    | dist
-  )/
-'''
-
-# iSort
-[tool.isort]
-profile = "black"
-line_length = 120
-multi_line_output = 3
-include_trailing_comma = true
-virtual_env = "venv"
-
-# flake8
-[tool.flake8]
-ignore = ["E501", "W503", "E226", "BLK100", "E203"]
-max-line-length = 120
-exclude = [
-    # No need to traverse our git directory
-    ".git",
-    # There's no value in checking cache directories
-    "__pycache__",
-    "*.egg-info",
-    "build"
-]
 # E501: Line too long
 # W503: Line break occurred before binary operator
 # E226: Missing white space around arithmetic operator
-
 [tool.ruff]
-lint.ignore = ["E501", "E226", "E203"]
+line-length = 120
 show-fixes = true
 exclude = [
   ".git",
   "__pycache__",
   "*.egg-info",
   "build"
 ]
-# change the default line length number or characters.
-line-length = 120
-lint.select = ['E', 'F', 'W', 'A', 'PLC', 'PLE', 'PLW', 'I', 'N', 'Q']
 
-[tool.yapf]
-ignore = ["E501", "W503", "E226", "BLK100", "E203"]
-column_limit = 120
+[tool.ruff.lint]
+select = ['E', 'F', 'W', 'A', 'PLC', 'PLE', 'PLW', 'I', 'N', 'Q', 'B', 'UP', 'SIM', 'RUF']
+ignore = ["E501", "E226", "E203"]
+
+[tool.ruff.lint.isort]
+known-first-party = ["ams", "ams_wf"]
+
+[tool.ruff.format]
+quote-style = "double"
+indent-style = "space"
+