Issues

• [Version: Any?] MS Annika crashes with error: The database file is locked.

  bughelp wantedworkaround
  Bug

  hgb-bin-proteomics/MSAnnika#45 · Filter by author michabirklbauer opened on Mar 29, 2026
  

• [Version: Any] MS Annika crashes on duplicate proteins with ambiguous sequences containing "X" amino acids

  bughelp wanted
  Bug

  hgb-bin-proteomics/MSAnnika#43 · Filter by author michabirklbauer opened on Sep 15, 2025
  1

  

• [Version: Any] MS Annika fails to capture peptide positions for sequences that contain X

  bughelp wantedworkaround
  Bug

  hgb-bin-proteomics/MSAnnika#38 · Filter by author michabirklbauer opened on Jul 2, 2025
  1

  

• [Version: >= 3.0.2 Non-Cleavable Search] Maximum peptide length > 50 slows down search for big databases

  infowontfixworkaround
  hgb-bin-proteomics/MSAnnika#25 · Filter by author michabirklbauer opened on Jun 22, 2024
  

• [Version: >= 2.2.2] Can't add protein scores in Protein Scorer node

  buginfoworkaround
  Bug

  hgb-bin-proteomics/MSAnnika#22 · Filter by author michabirklbauer opened on Jun 19, 2024
  

• [Version: Any] Duplicate proteins crash MS Annika

  buginfoworkaround
  Bug

  hgb-bin-proteomics/MSAnnika#21 · Filter by author michabirklbauer opened on Jun 19, 2024
  1

  

• [Version: Any] Proteome Discoverer doesn't parse MGF scan numbers correctly

  infowontfixworkaround
  hgb-bin-proteomics/MSAnnika#20 · Filter by author michabirklbauer opened on Jun 19, 2024
  

• [Version: Any] Specifying crosslinker as fixed/variable modification leads to abort of search

  infowontfixworkaround
  hgb-bin-proteomics/MSAnnika#12 · Filter by author michabirklbauer opened on Aug 28, 2023
  

• [Version: <= 1.1.4] Assertion Failed: Not all accessions found in target and decoy files

  infowontfix
  hgb-bin-proteomics/MSAnnika#11 · Filter by author michabirklbauer opened on Aug 28, 2023