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update data clients based on email history #175

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31 changes: 25 additions & 6 deletions docs/about/data-clients.rst
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Expand Up @@ -6,22 +6,29 @@ Data clients are academic and commercial resources that use CIViC data (for exam
- `BioDiscovery NxClinical <https://www.biodiscovery.com/products/NxClinical>`_
- `Biogazelle <https://www.biogazelle.com/>`_
- `BioGPS <http://biogps.org/plugin/1238/civic/>`_
- `BioMuta <https://hivelab.biochemistry.gwu.edu/biomuta>`_
- `Cambridgene <http://www.cambridgene.com/>`_
- `Cancer Genome Interpreter <https://www.cancergenomeinterpreter.org/>`_
- `CancerStop Android Application <https://play.google.com/store/apps/details?id=com.sequilabs.cancerstop>`_
- `CBioPortal <http://www.cbioportal.org/>`_
- `C-CAT <https://www.ncc.go.jp/en/c_cat/index.html>`_
- `CIViC Compass <https://civiccompass.vercel.app/>`_
- `CIViCmine <http://bionlp.bcgsc.ca/civicmine/>`_
- `ClinGen Variant Curation Interface (VCI) <https://curation.clinicalgenome.org/>`_
- `DAPHNI – A platform for precision medicine of multiple myeloma <http://ascopubs.org/doi/10.1200/PO.18.00019>`_
- `Database of Curated Mutations (DoCM) <http://www.docm.info/>`_
- `ETH Nexus Personalized Health Technologies - Swiss Variant Interpretation Platform for Oncology <http://www.nexus.ethz.ch/>`_
- `Euformatics OmnomicsNGS <http://euformatics.com/ongs/>`_
- `DNAnexus Cohort Browser <https://documentation.dnanexus.com/user/cohort-browser/analyzing-somatic-variants#viewing-gene-and-sample-details>`_
- `ETH Nexus Personalized Health Technologies - Swiss Variant Interpretation Platform for Oncology <https://www.nexus.ethz.ch/>`_
- `Euformatics OmnomicsNGS <https://euformatics.com/>`_
- `Gemini <http://gemini.readthedocs.io/en/latest/>`_
- `Geneyx Analysis, WES and WGS data analysis & Interpretation platform <https://geneyx.com/geneyxanalysis/>`_
- `Genome Nexus <https://www.genomenexus.org/>`_
- `Genomize <https://genomize.com/about_us/>`_
- `GenomOncology <https://genomoncology.com/about-us/>`_
- `Genoox <https://www.genoox.com/>`_
- `GoldenHelix - VSClinical <http://goldenhelix.com/products/VarSeq/vsclinical.html>`_
- `Hartwig Medical Foundation <https://www.hartwigmedicalfoundation.nl/en/>`_
- `Illumina Connected Insights <https://assets.illumina.com/products/by-type/informatics-products/connected-insights.html>`_
- `Johns Hopkins Molecular Tumor Board <https://www.hopkinsmedicine.org/news/articles/the-gaitway-tumor-board>`_
- `International Cancer Genome Consortium (ICGC) Data Portal <https://dcc.icgc.org/>`_
- `LifeMap Sciences’ GeneCards Knowledgebase Suite <https://www.genecards.org>`_
Expand All @@ -30,18 +37,30 @@ Data clients are academic and commercial resources that use CIViC data (for exam
- `Microsoft Research - Natural Language Processing <https://www.microsoft.com/en-us/research/wp-content/uploads/2017/05/tacl17.pdf>`_
- `MolecularMatch <https://www.molecularmatch.com/>`_
- `Monarch Initiative (via Wikidata) <https://monarchinitiative.org/>`_
- `My Variant Info <http://myvariant.info/>`_
- `MyVariant.info <https://myvariant.info/>`_
- `Monarch Iniative SEPIO - Scientific Evidence and Provenance Information Ontology <https://github.com/monarch-initiative/SEPIO-ontology>`_
- `NDEx - The Network Data Exchange <http://www.ndexbio.org>`_
- `NDEx - The Network Data Exchange <https://www.ndexbio.org/>`_
- `NGeneBio <https://www.ngenebio.com/en/sub/company/about.asp>`_
- `OncoMX <https://www.oncomx.org/>`_
- `PathOS - Peter MacCallum Cancer Centre <https://www.petermac.org/about/signature-centres/centre-clinical-cancer-genomics/molecular-diagnostic-software>`_
- `ProteinPaint <https://pecan.stjude.cloud/proteinpaint>`_
- `PathOS - Peter MacCallum Cancer Centre <https://github.com/PapenfussLab/PathOS>`_
- `ProteinPaint <https://proteinpaint.stjude.org/>`_
- `Rancho BioSciences <https://ranchobiosciences.com/who-we-are>`_
- `SciLifeLab Molecular Tumor Board Portal <https://www.scilifelab.se/news/portal-to-help-interpret-cancer-data-developed-first-patients-selected/>`_
- `Smart Cancer Navigator <https://smart-cancer-navigator.github.io/app>`_
- `SoftGenetics - Geneticist Assistant NGS Interpretative Workbench <https://softgenetics.com/>`_
- `SolveBio <https://www.solvebio.com/>`_
- `TCGA Next-Gen Clustered Heat Map Compendium <http://tcga.ngchm.net/>`_
- `The Hyve <https://thehyve.nl/solutions/cbioportal/>`_
- `Treehouse Childhood Cancer Initiative <https://treehousegenomics.ucsc.edu/>`_
- `UCSC Genome Browser (My Data -> Track Hubs -> Cancer Genomics Tracks) <https://genome.ucsc.edu/cgi-bin/hgHubConnect>`_
- `VA National Precision Oncology Program <https://www.research.va.gov/research_in_action/Precision-Oncology-Program.cfm>`_
- `Variant Interpretation for Cancer Consortium (VICC) <http://cancervariants.org/>`_
- `VarSome <https://varsome.com/>`_
- `Velsera <https://velsera.com/about-us/>`_
- `Wikidata <https://www.wikidata.org/>`_

Data Distribution
-----------------
CIViC data are also available through:

- `CIViC on the AWS Registry of Open Data <https://registry.opendata.aws/civic/>`_