MRklar

Toolbox for preprocessing magnetic resonance (MR) imaging data in Matlab.

Required software:

• Freesurfer (https://surfer.nmr.mgh.harvard.edu/)
• FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki)
• MRIcron (https://www.nitrc.org/projects/mricron/)

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Example usage

• see 'MASTER.m' for step-by-step instructions
• see 'utilityFunctions/create_preprocessing_scripts.m' to run all steps using shell scripts

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klar (German)

• clear (clarified)
• clear (optically purified)
• (Geht klar!): "sounds good"

Marklar

• a word to describe any person, place, or thing