Issues

• Inquiry on calculating avg_distance_to_effective_5p_end

  enhancement
  genome/bam-readcount#111 · Filter by author lykstudio opened on Nov 8, 2024
  1

  

• bam-readcount total count differs from igv total count

  bug
  Bug

  genome/bam-readcount#110 · Filter by author aury98 opened on Oct 16, 2024
  10

  

• NUL (\x00, ^@) and other control characters in output

  genome/bam-readcount#107 · Filter by author Kaddea opened on Jun 27, 2024
  4

• Compilation Issue

  genome/bam-readcount#102 · Filter by author KevinYie opened on Jun 30, 2022
  3

• Issue on installation

  genome/bam-readcount#100 · Filter by author idoit4fun opened on Jun 16, 2022

• fatal error: compilation failed

  genome/bam-readcount#99 · Filter by author smoretti opened on May 5, 2022
  1

• bam-readcount build from release source code zip/tarball does not have a version number

  genome/bam-readcount#96 · Filter by author apldx opened on Jan 19, 2022

• Error when path_to_bam have bam in middle

  genome/bam-readcount#88 · Filter by author sssimonyang opened on Oct 18, 2021

• Inconsistent output

  genome/bam-readcount#87 · Filter by author mnshgl0110 opened on Oct 14, 2021
  2

  

• Reason for low coverage output for deepseq data

  genome/bam-readcount#85 · Filter by author bioinformaticsexpert opened on Sep 25, 2021
  5

• [JOSS REVIEW] Minor edits to the github-based documentation

  genome/bam-readcount#81 · Filter by author friedue opened on Sep 15, 2021
  3

  

• compilation failed

  genome/bam-readcount#78 · Filter by author lmanchon opened on Aug 27, 2021
  5

• Make Error for boost on MacOS

  genome/bam-readcount#77 · Filter by author chintan-vora-tfs opened on Aug 10, 2021
  4

• Only counting multiple aligned reads for one chromosome with "-l *.bed" and "-q 0" parameters

  genome/bam-readcount#72 · Filter by author Adglink opened on May 16, 2021
  5

• fpfilter.pl - failed to get readcounts for variant allele

  genome/bam-readcount#71 · Filter by author Souzavgp opened on May 10, 2021

• Getting the read names/ IDs?

  genome/bam-readcount#68 · Filter by author ghost opened on Jul 16, 2020
  4

• Distance to both 5' and 3' ends

  genome/bam-readcount#67 · Filter by author matnguyen opened on Jun 4, 2020

• Update included samtools and boost

  genome/bam-readcount#65 · Filter by author serge2016 opened on Sep 15, 2019
  3

• Run without errors but failed to produce the site list

  genome/bam-readcount#64 · Filter by author drtamermansour opened on Aug 27, 2019
  8

• missing avg_distance_to_effective_3p_end

  genome/bam-readcount#63 · Filter by author stemangiola opened on May 9, 2019

• Feature request: Request for unmapped region option

  genome/bam-readcount#62 · Filter by author ankit4035 opened on Apr 5, 2019
  2

• make test fails RunBamReadcount (python vs python2)

  genome/bam-readcount#60 · Filter by author darked89 opened on Feb 27, 2019

• Update bioconda deployment to Python3.7

  genome/bam-readcount#59 · Filter by author MatthewPorterGN opened on Jan 8, 2019
  2

• print-individual-mapq not working

  genome/bam-readcount#58 · Filter by author fkokocinski opened on Oct 22, 2018
  2

• [bam_plp_destroy] memory leak: 1. Continue anyway.

  genome/bam-readcount#56 · Filter by author jflucier opened on Jul 26, 2018
  1