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18 changes: 9 additions & 9 deletions README.md
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<td>Implementing a YOLACT-Style Model for Real-Time Instance Segmentation in Piximi</td>
<td>Implementing a native, trainable, instance segmentation model Piximi</td>
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<div class="long-description" >
Piximi will feature an integrated, YOLACT-style instance segmentation model capable of running entirely in the browser, giving users a fast, secure, and open-source alternative to existing bioimage analysis tools.
Piximi will feature an integrated instance segmentation model capable of being fine-tuned and used for inference entirely in the browser, giving users a fast, secure, and open-source alternative to existing bioimage analysis segmentation tools.
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<td>Large</td>
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This project will focus on:
<ul>
<li>Developing and fine-tuning a YOLACT-style model (You Only Look At Coefficients) for biological image segmentation.</li>
<li>Developing a lightweight YOLACT-style (You Only Look At Coefficients) model for biological image segmentation.</li>
<li>Pretraining the model using high-quality biological datasets to ensure accurate and robust segmentation results.</li>
<li>Optimizing and porting the model to JavaScript, enabling fast, client-side inference in Piximi without requiring a backend server.</li>
<li>Optimizing and porting the model to JavaScript, enabling fast, client-side fine tuning and inference in Piximi without requiring a backend server.</li>
</ul>
This will allow seamless, on-device segmentation, ensuring privacy, speed, and accessibility for users analyzing bioimages.
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<td>N/A</td>
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<div class="long-description">
While Piximi provides an intuitive browser-based interface, many researchers and data scientists prefer working within Jupyter notebooks for interactive data exploration and analysis.
While Piximi provides an intuitive browser-based interface, many researchers and data scientists prefer working within computational notebooks for interactive data exploration and analysis.
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<div>
This project will enable Piximi’s functionality within Jupyter notebooks by:
This project will enable Piximi’s functionality within computational notebooks (e.g. Jupyter, marimo, Google Colab, VS Code, etc.) by:
<ul>
<li>Building an API for use with AnyWidget, allowing Jupyter users to access Piximis tools.</li>
<li>Connecting Piximi’s Redux state to the API, ensuring seamless interaction between the Jupyter frontend and Piximi’s image-processing capabilities.</li>
<li>Providing a smooth user experience, enabling users to upload images, annotate, classify, and measure them—all from a Jupyter notebook.</li>
<li>Building an AFM (Anywidget Front-End Module) compliant API, allowing notebook users to access Piximi's tools.</li>
<li>Connecting Piximi’s Redux state to the API, ensuring seamless interaction between the notebook frontend and Piximi’s image-processing capabilities.</li>
<li>Providing a smooth user experience, enabling users to upload images, annotate, segment, classify, and measure them—all from a notebook environment.</li>
</ul>
</div>
This integration will expand Piximi’s accessibility and make it easier for researchers to incorporate Piximi into their Python-based workflows.</div>
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