Issues

• Systematic failure during ABFE setup with GROMACS KCl systems

  choderalab/yank#1318 · Filter by author MartinFuentetaja opened on Jan 30, 2026
  1

• Can Yank prepare a mixed solvent system?

  choderalab/yank#1317 · Filter by author yt203y opened on Sep 24, 2025

• How to get 181L-pdbfixer.pdb in example folder?

  choderalab/yank#1316 · Filter by author mainguyenanhvu opened on Sep 12, 2025

• High energy when applying restraint in one phase

  choderalab/yank#1315 · Filter by author jbodosa opened on Apr 10, 2025

• Problem facing while generating Boresch restraints

  choderalab/yank#1313 · Filter by author shilpa888 opened on Oct 18, 2024

• YANK Support for Multiple Conformational States

  choderalab/yank#1312 · Filter by author mmahmedgithub opened on Jun 21, 2024

• Calculate Free binding energy without schrodingers suite

  choderalab/yank#1311 · Filter by author FlorianSchustek3T opened on Feb 28, 2024

• Clarification on why vacuum simulation needed for hydration free energy

  choderalab/yank#1310 · Filter by author zanebeckwith opened on Dec 12, 2023
  2

• leap returned non-zero exit status 31

  choderalab/yank#1309 · Filter by author sobertie opened on Dec 11, 2023

• Varying free energy estimates depending on sampler used

  choderalab/yank#1307 · Filter by author thomas-elix opened on Dec 11, 2023

• support Membrane Protein Systems ?

  choderalab/yank#1306 · Filter by author ErikZhang-9762 opened on Nov 29, 2023

• Silent GAFF2 failures can happen easily

  choderalab/yank#1304 · Filter by author simonaxelrod opened on Jul 10, 2023

• Question: How to measure simulation time and how much is necessary?

  choderalab/yank#1303 · Filter by author sammun-insitro opened on May 18, 2023

• Issue in Yank's calls to OpenMMTools MultiStateReporter

  choderalab/yank#1302 · Filter by author sukritsingh opened on Apr 26, 2023
  1

• support for python 3.10?

  choderalab/yank#1301 · Filter by author zhang-ivy opened on Apr 19, 2023
  2

• problem during absolute binding energy calculation

  choderalab/yank#1300 · Filter by author mayank-kohli opened on Apr 14, 2023
  3

• NetCDF upstream changes breaking Yank (and can't update OpenMMtools)

  choderalab/yank#1298 · Filter by author sukritsingh opened on Apr 12, 2023

• I got the following error.

  choderalab/yank#1295 · Filter by author VirtualChemist opened on Mar 17, 2023
  6

• pymbar 4 compatibility

  choderalab/yank#1294 · Filter by author j-wags opened on Dec 8, 2022
  1

• Load() missing one argument

  choderalab/yank#1293 · Filter by author RishalAggarwal opened on Nov 3, 2022

• Free energy of solvation for charged ligand

  choderalab/yank#1292 · Filter by author moradza opened on Oct 31, 2022

• The periodic box size has decreased to less than twice the nonbonded cutoff

  choderalab/yank#1291 · Filter by author vemaparna opened on Sep 26, 2022

• a error about antecamber

  choderalab/yank#1289 · Filter by author kingljy0818 opened on Sep 8, 2022
  5

• Yank installation Python3.10 import error

  choderalab/yank#1288 · Filter by author JonaTheHutt opened on Sep 3, 2022
  1

• Migrate thermodynamic trailblazing to openmmtools

  refactoring
  choderalab/yank#1287 · Filter by author jchodera opened on Jul 21, 2022