Issues

• (Tentative) Improvement of inner data structures following what I did (or not) on victordev for wasm

  Feature

  bacpop/ska.rust#115 · Filter by author vrbouza opened on Oct 7, 2026

• How does SKA calculate GC% ?

  bacpop/ska.rust#111 · Filter by author tseemann opened on Mar 16, 2026
  1

• Spindle and kinetochore-associated protein 2

  bacpop/ska.rust#110 · Filter by author tseemann opened on Mar 16, 2026

• Issue running ska distance with pandas >=3

  bacpop/ska.rust#109 · Filter by author kristyhoran opened on Mar 12, 2026
  1

• Need 500 GB of RAm for 2000 assemblies?

  bacpop/ska.rust#108 · Filter by author tseemann opened on Feb 16, 2026
  1

• Rust compilation requirements

  bacpop/ska.rust#102 · Filter by author verdurin opened on Nov 20, 2025
  2

• Possible column label mix-up and unexpected self-comparison distance in SKA2

  bacpop/ska.rust#96 · Filter by author taffners opened on May 22, 2025
  4

• suggestion: new input option for ska build (1 file containing n isolates)

  bacpop/ska.rust#94 · Filter by author rderelle opened on Apr 8, 2025
  2

• How to best call variants with ska lo?

  bacpop/ska.rust#93 · Filter by author rrwick opened on Mar 5, 2025
  3

• Possible run with k gretter than 63

  enhancementnot planned
  bacpop/ska.rust#83 · Filter by author kebern opened on Oct 16, 2024
  5

• Possible faster bloom filter

  bacpop/ska.rust#78 · Filter by author johnlees opened on Aug 5, 2024
  1

• Possible changes to fastq input

  enhancement
  bacpop/ska.rust#52 · Filter by author johnlees opened on Aug 14, 2023
  11

  

• Feature requests: different mixture model; combined ska build & cov

  enhancement
  bacpop/ska.rust#50 · Filter by author rderelle opened on Jul 20, 2023
  2

  

• Add ambiguous genotypes in VCF output

  enhancementnot planned
  bacpop/ska.rust#5 · Filter by author johnlees opened on Feb 7, 2023
  1