CI

Workflow runs for CI

• [auto-optimize]: Speed up intersect and the tools that share its code

  requires action with the application:
  CI#219:Pull request#1149openedbyjmschrei
  jmschrei:faster-intersect

  Oct 19, 2026Action required
  More actions for workflow run 219

• test: add 718 tests for intersect and the tools built on it

  requires action with the application:
  CI#218:Pull request#1148openedbyjmschrei
  jmschrei:intersect-family-tests

  Oct 19, 2026Action required
  More actions for workflow run 218

• Embed a terminal on the quick start page!

  completed successfully:
  CI#217:Pull request#1147openedbyrobertaboukhalil
  robertaboukhalil:sandboxbio-embed

  Oct 1, 20263m 28s
  More actions for workflow run 217

• Fix split coverage denominators for BED12 and BAM queries

  requires action with the application:
  CI#216:Pull request#1146openedbydnncha
  dnncha:fix/coverage-split-metric-length

  Sep 24, 2026Action required
  More actions for workflow run 216

• intersect: retain the start of a merged overlap under -split

  failed:
  CI#215:Pull request#1145openedbydnncha
  dnncha:fix/split-union-start

  Sep 6, 202630d 0h 0m 23s
  More actions for workflow run 215

• intersect: apply -F and -r to each database record under -split

  failed:
  CI#214:Pull request#1144openedbycindykrafft
  cindykrafft:fix/intersect-split-per-record-F

  Sep 5, 202630d 0h 1m 18s
  More actions for workflow run 214

• flank: with -s, treat records without a "-" strand as forward instead of dropping them

  failed:
  CI#213:Pull request#1143openedbycindykrafft
  cindykrafft:fix/issue-1123-flank-s-unstranded

  Sep 4, 202630d 0h 4m 28s
  More actions for workflow run 213

• ci: install htslib build deps (libbz2/liblzma/zlib)

  completed successfully:
  CI#212:Commit614e9a5pushedbyarq5x
  master

  Jun 10, 20263m 1s
  More actions for workflow run 212

• ci: bump checkout and upload-artifact actions to v4

  failed:
  CI#211:Commit8dfbabdpushedbyarq5x
  master

  Jun 10, 20261m 13s
  More actions for workflow run 211

• getfasta: error on -nameKey without value; test quoted/empty attr val…

  failed:
  CI#210:Commitf64ba1cpushedbyarq5x
  master

  Jun 10, 20266s
  More actions for workflow run 210

• getfasta: error on -nameKey without value; test quoted/empty attr val…

  failed:
  CI#209:Commitf64ba1cpushedbyarq5x
  getfasta-namekey

  Jun 10, 20266s
  More actions for workflow run 209

• Fix bamtofastq producing duplicate reads (fixes #1132)

  failed:
  CI#208:Commit1872ce1pushedbyarq5x
  master

  Jun 10, 20266s
  More actions for workflow run 208