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feat(geo): extract country from geo locations and add world map - #822
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Relax unique-name validation in the request-changes organism repeater so users can link organisms that already exist in the database. Reject names already attached to the target molecule instead. Fixes #772
Align Filament v4 Select option keys with stored state for existing synonyms, CAS, geo locations, organisms, and citations. Resolve the target molecule from form state and report records so options remain valid on Livewire submit requests. Fixes #775
Use explicit null checks for molecule synonyms/CAS options and remove unreachable is_string handling for mol_ids array cast.
Introduce rule-based country parsing from geo location names with Nominatim fallback, backed by config-driven aliases and unit tests. Refs #695
Centralize geo location creation in GeoLocationService and add coconut:enrich-geo-locations for backfilling country metadata. Refs #695
Add a public /globe page with country-level molecule, organism, and geo-location stats using globe.gl choropleth visualization. Refs #695
Codecov Report❌ Patch coverage is Additional details and impacted files@@ Coverage Diff @@
## development #822 +/- ##
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+ Coverage 6.14% 22.43% +16.28%
- Complexity 1736 2333 +597
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Files 227 260 +33
Lines 8945 11035 +2090
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+ Hits 550 2476 +1926
- Misses 8395 8559 +164 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
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Resolve conflicts keeping geo globe/nominatim features alongside development tree-of-life, organism taxonomy, Scalar CSP, and blog nav.
Regenerate lockfile from development base so CI npm ci includes @rollup/rollup-linux-x64-gnu alongside globe.gl dependencies.
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Summary
geo_locations.namewith configurable aliases, Mexican state heuristics, and Nominatim geocoding fallbackGeoLocationServiceand enrich country metadata during importscoconut:enrich-geo-locationsartisan command for backfilling existing records/globechoropleth page visualizing molecule, organism, and geo-location counts by countryCloses #695
Implementation notes
rinvex/countries(already in the project) for ISO codes and flag emojiTest plan
./vendor/bin/sail test tests/Unit/GeoLocationCountryExtractorTest.php tests/Unit/NominatimGeocoderTest.php./vendor/bin/sail artisan coconut:enrich-geo-locations --dry-run --rules-only./vendor/bin/sail artisan coconut:enrich-geo-locations --rules-only/globeand verify choropleth, metric toggles, and hover panelcountry_codeviaGeoLocationService