Refactoring Branch - #79

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refactor_24

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Commits on Jun 3, 2026

404 for list by nonexistent username

summerhenson
authored and
krzywon
committed
dfdeb66
Switch to filter by username param not request user

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2f0ed8c
Change permissions tests to expected user list behavior

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01f7dae
Change data tests to expected user list behavior

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920d2ea
Create initial version of dataset model

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f863436
Start OperationTree model

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898ccb6
Start Session model

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f2f6b4e
Begin SasData serializers

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fbf9cca
Start of Quantity serializer

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7291d8b
Serializer for NamedQuantity

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8ca8a3d
Continue SasData serializer and add notes

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16706f7
Add class for MetaData model

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5f3998d
Temporarily comment out unmigrated models

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411486b
Serializers for units

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c899c5c
QuantityHistory serializer

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bc2a134
Serializers for Dataset and Group

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13f123f
Framework for metadata serializers

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643dde5
Instrument metadata serializers

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dafc9d5
Finish metadata serializers

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8415bb5
Updates to in-progess data models

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abd26bc
Initial versions of phase 1 models

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a6442e8
model migrations

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af2844d
Add field for authorized non-owners for data

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244c74f
Change permissions to check users with access instead of just ownership

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f6f5df1
Ensure owner can access data

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58bde89
Bare bones serializers for database models

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4b242e7
Switch serialization methods to non-protected so pycharm stops nagging me

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6707b32
Deserialization for SasData class

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aa3e34f
Deserialization for Group and Dataset classes

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917f3ce
Deserialization for Quantity classes

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c32b444
Add functionality to give and remove access to a file

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f1bdbf8
Add response to access management view

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cb26589
Tests for access granting/removal

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2af9eaa
Fix errors in access management view

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f43fabe
More tests for access management

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df68e09
Remove redundant code in permissions

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6149c79
QuantityType serialisation for some types

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b89bdb8
Allow viewing who has access to a file

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0d7ec28
Test listing users with access to a file

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0f450b4
Test permissions on file access management views

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e8433ef
Serialize variance not standard deviation

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156c82c
Finish models pending later changes

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0c1b9fe
Add to documentation on future ORCID integration

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9308f31
Change data creation status code to 201

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3987cd1
Modify tests to run faster

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de9abf8
Change authentication tests to run faster

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da7ba9e
Speed up data tests

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bd56f03
One more attempt to speed up user_app tests

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ee6e4e1
Create view to delete a file

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485f71d
Tests for file delete

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ccf8368
Reorganize data tests

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0ba8cc9
Start planning tests for dataset

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457f0ce
Initial version of DataSetView

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450cdd6
General structure of dataset views

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55efe12
Updated version of DataSetView pending serialization changes

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05a3ceb
First draft of SingleDataSetView

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8f10e97
First draft for DataSetUsersView

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5c6c24a
Add filter based on username in get request body

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6eee3df
Nested metadata serialization

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fcf4a7c
Fix error in paths

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47cbd8d
Structure for dataset tests

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5fdd051
Fix filtering by username

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390e68d
Tests for listing datasets

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b1b7678
Tests for loading a dataset

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7bd43c6
Test for deleting a dataset

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51b8d0f
Fix error in permissions check

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4b0e5d0
Tests for updating a dataset

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bd9fcee
Only allow data owner to view/manage access

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c8826cb
Tests for listing users with access to a dataset

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eee6f0d
Test granting access to dataset

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7ec9592
Fix dataset creation

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5c88067
Set owner when data is created

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1cbf256
Disallow creating private data without an owner

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af98488
Finish tests for DataSetView

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5736653
Fix error in accessing request user from serializer

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2387679
Modify existing SingleDataSet tests

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b0e8ff0
Tests for unauthorized deletes

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65a156d
Finish DataSetAccessManagement tests

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b275cf1
Allow private data owner to change, not just public

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832dac1
Document dataset tests + one more test

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ac3079f
Documentation for datafile tests

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1fc96de
Tests to make sure a user can't specify a data object id

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189c216
Add operation/parameters fields to OperationTree model

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253393e
Change response status to 401 for unauthenticated

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711cb7a
Change tests to reflect status code change

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8c16660
Skeleton of reformatted data file API

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f326cc1
Fill out DataFileView methods

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1f584e1
Change serializer validation to raise exception

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3b863b9
SingleDataFileView methods

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54ba8f2
DataFileUsersView methods

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21b4f29
Update urls for DataFile

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d800735
Fix error in get method for file download

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8b7f771
Fix error in datafile post

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080456e
Update tests for url changes

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8128355
Updates for changes to SasData class

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f8c57cf
Add published state to session model

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b5b6566
Update metadata serializers for latest changes

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3cd9e59
Update metadata model for recent changes

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44f04b5
Account for metadata changes in test

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3269b76
Changes to OperationTree model

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22235fd
Change metadata serialization in SasData serialization method

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d65e5af
Change defaults and designate allowed operations for metadata/operations models

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93d940f
Customize creation in OperationTreeSerializer

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e165a6d
Quantity model

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319269d
Change SasData serializer to facilitate database deserialization

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9748c12
Nested quantity serialization in DataSetSerializer

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11ca9a7
Add nested quantities to tests

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6c619ca
Comment out failing sasdata tests until they get fixed

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326760c
Edits to github actions/yml files

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e6125d0
Clarify logic in permissions

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0af7d7b
Test tokens valid on multiple login

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8e04f09
Remove mysterious extra spaces

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7e9f367
Change operations model to refer to quantity

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b88437b
Add nested serialization for operation tree in quantity

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bc8e54c
Make operations tree optional for a quantity

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00e5246
Rename api clients in tests for clarity

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f0fbca3
Restrict Django test runner to database tests

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4603bf4
String representation of units for serialization

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d6eeeac
Change and test response for changing access to a DataFile

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5877827
Add hash value to quantity serialization

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dd6ae8b
Delete old method-based views

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fbe04e0
Change and test response for DataSet access management

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e12b789
Serialization for QuantityType

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d2a5bf8
Empty class for operation testing

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d875813
PublishedState and Session models

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0c36841
Empty classes for session views

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e673116
Basic serializer for session

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fb4be4e
Nested serializers in SessionSerializer

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8e33187
session post method

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0f9e4f7
Session access management views

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9027991
urls for sessions

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bca9d5e
methods for SingleSessionView - might need to revise later

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545e17c
Switch key from OperationTree to Quantity

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1728648
Add nested OperationTree to Quantity serializer

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ad108da
Add title to Session

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5e7e8c8
Use numerical_encoding in sasdata for QuantityType serialization/deserialization

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4d344ba
Change some comments in models

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9aaa583
Fix some bugs in operation tree deserialization

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a5591ee
Test creation of operation trees

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3f3d8e7
Test creating a quantity with no operations performed on it

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98e89f8
Test creating an operation tree with an invalid operation

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e4493ef
Store quantity label as part of quantity

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d354c50
Customize OperationTree serialization from database representation

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c09bd4b
Test GET with unary operation

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5cfa223
More tests for GET with operation trees

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1a48b71
Fix minor bug in OperationTree tests

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41d9b18
Comments and planning for OperationTree testing

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bde881f
Reorganize OperationTree tests and move to dedicated file

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d5b11da
Tests for tensor product operation

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71cb994
Validate nested operations and check parameters based on type

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1889498
Test creating invalid non-top-level operation fails

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9c8485d
Separate class for invalid operation tree testing

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5641b34
Check operation trees only in operation tree get tests

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afcc0a5
Test creating operations with missing parameters fails

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3272253
Test creating a quantity with no history

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d37c38f
Check whether deleting a dataset deletes its quantities (it doesn't) (this is kind of a problem)

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a21e1ae
Test whether deleting a dataset/its quantities deletes operations (it doesn't do this either)

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13ea044
Try switching from many-to-many to one-to-many relationship for DataSet and Quantity

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cd626bb
Change operations test setup to account for altered model relationship

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015ae99
Remove dataset id from serialized quantity

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5e6b1ef
Prevent deleting parent operations instead of cascading

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c6d8d67
Automatically delete OperationTrees when quantities are deleted

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a9d7d6c
Test nested OperationTree instances are deleted

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02c44be
Change direction of DataSet/MetaData relationship for automatic deletion

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47d8006
Change direction of Quantity/OperationTree relationship for automatic deletion

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8605d8f
Change direction of Session/DataSet relationship for automatic deletion

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1a4c28e
Change direction of Session/PublishedState relationship for automatic deletion

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542d489
Change direction of OperationTree parent-child links for automatic delete

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b174b3f
Serializer for session

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2718c4b
Get method for Sessions

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ab5ad16
Return is_public in access management GET requests

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3fd6091
Remove dataset id from MetaData instance serialization

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1ea1c9e
Test GET dataset with metadata

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9d1a925
Add comments to serializer classes

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5569a32
Fix serialization of DataSet with files

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afb2a3b
Check access to files in a dataset

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b695602
Test DataSet creation with files

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0b6a5e4
Filter files in dataset by access

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5964cdf
Test loading dataset with files

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5730ec9
Start session tests

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2e5b3e1
Copy session is_public value to composing datasets

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281bd45
Test listing sessions

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75c64fb
Fix bugs in DataSet creation nested in a Session

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3d24ec1
Include username and authentication status in all post responses

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954ec48
Disallow creating private sessions without an owner

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9244550
Test Session post method

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58cbc1a
Use the right serializer for sessions and return id with get

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0789f1b
Test get method for individual sessions

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0cfa6ea
Test put method for individual sessions

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a1a4a67
Test Session delete method

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7f5a6e3
Propagate access changes from session to composing datasets

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62a7b2c
Test Session access management

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b29913c
Return current_user as username not id

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66d4e78
Comments of session testing

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756cf59
Add field for history references to Quantity

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ccbb2ae
Serialization for Quantity variable references

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6a63374
Change serialization of QuantityHistory references to match API

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3ee37ab
Serialize Quantity operation_tree and references as history

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bfdaad3
Remove infinite serialization loop of quantities and histories

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5bae9a1
Separate model for history reference quantities

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c6eaecc
Test references in quantity history

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7860fd5
Add tests to test updating a DataSet

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66be25a
Propagate update to session is_public to datasets

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9569b17
PublishedState serialization and minor serializer create method simplifications

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8223a4a
Outline of PublishedState views

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d406a43
PublishedState list method

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cb8447c
Serializer to restrict PublishedState update to published field

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dd8e493
Post method for PublishedState

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db6de1f
Get method for single PublishedState

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fef2ef1
Update method for PublishedState

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75da757
Delete method for PublishedState

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8e3407e
Planning for PublishedState testing

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54ad406
PublishedState urls

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f84cd11
Test listing published states

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c104d0a
Fix bugs in PublishedState creation

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b8b71bb
Check that session doesn't already have a published state

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9cc8ef0
Test creating a published state

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fec53f6
Add fields to PublishedState get response

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aae2793
Test individual PublishedState get method

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3b90189
Test PublishedState update method

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2a648f4
Test PublishedState delete method

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517c889
Session creation example script

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ec735ca
Add models to admin interface

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24cacd6
Account for json strings in post requests

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a56c55e
Enable session-based authentication

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dfc415a
Comments for PublishedState tests

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bf9b3bf
Test that metadata is required for dataset creation

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b06e244
Minor changes suggested by Jeff

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dc84d8d
Nested PublishedState update in Session

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8b03812
Test nested PublishedState

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3f314b3
Test listing published states by username

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e0c810f
Deserialization methods for sasdata structures

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b0a8a0d
ruff formatting changes
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11b203d
merge refactor_24 into sasdata-database-cherry-pick-merge and resolve conflicts
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38ebaad
ruff fixes
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committed
58f703e
ruff fixes
krzywon
committed
a933ba2
merge refactor_24 into sasdata-database-merge and resolve conflicts
krzywon
committed
4e9db5a

Commits on Jun 4, 2026

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Commits

Commits on Jun 3, 2026