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Cycle closure dataframe hangs on large networks

Status: Open.

#238 In OpenFreeEnergy/cinnabar;

· jthorton opened on Sep 8, 2026

CLD Labels change depending on the sources provided

Status: Open.

#237 In OpenFreeEnergy/cinnabar;

· jaclark5 opened on Sep 4, 2026

Make all plotting functions return subplots

Status: Open.

#235 In OpenFreeEnergy/cinnabar;

· jthorton opened on Aug 21, 2026

Support multiple sources on plots?

Status: Open.

#226 In OpenFreeEnergy/cinnabar;

· jthorton opened on Jun 17, 2026

get_cycle_closure_dataframe does not consider self loop edges

Status: Open.

#219 In OpenFreeEnergy/cinnabar;

· hannahbaumann opened on Jun 3, 2026

Cycle enumeration strategy in get_cycle_closure_dataframe

Status: Open.

#218 In OpenFreeEnergy/cinnabar;

· hannahbaumann opened on Jun 3, 2026

Rework bootstrap_statistic to align with metric functions

Status: Open.

#217 In OpenFreeEnergy/cinnabar;

· jthorton opened on Jun 3, 2026

Rework pair_plot mega function

Status: Open.

#214 In OpenFreeEnergy/cinnabar;

· jthorton opened on Jun 1, 2026

Support multiple experimental measures

Status: Open.

#196 In OpenFreeEnergy/cinnabar;

· jthorton opened on Mar 26, 2026

Adding documentation on how to go from openfe gather results to cinnabar

Status: Open.

#195 In OpenFreeEnergy/cinnabar;

· IAlibay opened on Mar 12, 2026

Update defaults on everything

Status: Open.

#179 In OpenFreeEnergy/cinnabar;

· jthorton opened on Jan 26, 2026

Add function to draw network with calculated values

Status: Open.

#176 In OpenFreeEnergy/cinnabar;

· jthorton opened on Jan 19, 2026