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Add CATChem configuration and species definitions for GCAFS integration - #5279

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bbakernoaa wants to merge 3 commits into
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bbakernoaa:feature/catchem
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bbakernoaa wants to merge 3 commits into
NOAA-EMC:developfrom
bbakernoaa:feature/catchem

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@bbakernoaa

@bbakernoaa bbakernoaa commented Sep 14, 2026 •

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  • Introduced new YAML files for CATChem field mapping and species configuration to support GCAFS.
  • Created a tracer list for CATChem species.
  • Updated build options to include the new CATChem model.
  • Modified build scripts to handle the new CATChem executable.
  • Enhanced workflow scripts to stage and manage CATChem runtime configuration and output files.
  • Added pre- and post-processing functions for CATChem in the forecast scripts.
  • Updated parsing scripts to accommodate new CATChem coupling options.

Description

Type of change

  • Bug fix (fixes something broken)
  • New feature (adds functionality)
  • Maintenance (code refactor, clean-up, new CI test, etc.)

Change characteristics

  • Is this change expected to change outputs (e.g. value changes to existing outputs, new files stored in COM, files removed from COM, filename changes, additions/subtractions to archives)? YES/NO (If YES, please indicate to which system(s))
    • GFS
    • GEFS
    • SFS
    • GCAFS
  • Is this a breaking change (a change in existing functionality)? NO
  • Does this change require a documentation update? YES
  • Does this change require an update to any of the following submodules? YES/NO (If YES, please add a link to any PRs that are pending.)
    • EMC verif-global
    • GDAS
    • GFS-utils
    • GSI
    • GSI-monitor
    • GSI-utils
    • UFS-utils
    • UFS-weather-model
    • wxflow

How has this been tested?

Checklist

  • Any dependent changes have been merged and published
  • My code follows the style guidelines of this project
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • I have documented my code, including function, input, and output descriptions
  • My changes generate no new warnings
  • New and existing tests pass with my changes
  • This change is covered by an existing CI test or a new one has been added
  • Any new scripts have been added to the .github/CODEOWNERS file with owners
  • I have made corresponding changes to the system documentation if necessary

- Introduced new YAML files for CATChem field mapping and species configuration to support GCAFS.
- Created a tracer list for CATChem species.
- Updated build options to include the new CATChem model.
- Modified build scripts to handle the new CATChem executable.
- Enhanced workflow scripts to stage and manage CATChem runtime configuration and output files.
- Added pre- and post-processing functions for CATChem in the forecast scripts.
- Updated parsing scripts to accommodate new CATChem coupling options.
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