Update regional rose-stem to RAL4.beta1

rose-stem/app/lfric_atm/file/file_def_lbcs.xml

@@ -6,7 +6,8 @@
     <field id="lbc_time" name="time" unit="seconds" operation="once" axis_ref="lbc_axis" />
     <field id="lbc_theta_data" name="theta" long_name="air_potential_temperature" standard_name="air_potential_temperature" unit="K" grid_ref="full_level_face_time_grid" operation="once" />
     <!-- <field id="lbc_rho_data" name="rho" long_name="air_density" standard_name="air_density" unit="kg m-3" grid_ref="half_level_face_time_grid" operation="once"/> -->
-    <field id="lbc_rho_r2_data" name="rho_r2" long_name="density_times_r_squared" unit="kg m-1" grid_ref="half_level_face_time_grid" operation="once"/>
+    <!-- <field id="lbc_rho_r2_data" name="rho_r2" long_name="density_times_r_squared" unit="kg m-1" grid_ref="half_level_face_time_grid" operation="once"/> -->
+    <field id="lbc_exner_data" name="exner" long_name="exner_pressure" unit="1" grid_ref="half_level_face_time_grid" operation="once"/>
     <field id="lbc_h_u_data" name="h_wind" long_name="horizontal_wind" unit="m s-1" grid_ref="half_level_edge_time_grid" operation="once"/>
     <field id="lbc_v_u_data" name="upward_wind" long_name="vertical_wind" standard_name="vertical_wind" unit="m s-1" grid_ref="full_level_face_time_grid" operation="once"/>
     <field id="lbc_q_data" name="q" standard_name="specific_humidity" unit="1" grid_ref="full_level_face_time_grid" operation="once" />

rose-stem/app/lfric_atm/file/iodef_ral.xml

@@ -51,6 +51,7 @@
 	<field id="read_upward_wind_in_wtheta" name="upward_wind" long_name="upward_air_velocity" standard_name="upward_air_velocity" unit="m s-1" grid_ref="full_level_face_grid" operation="once" />
 	<field id="read_theta_in_wtheta" name="theta" long_name="air_potential_temperature" standard_name="air_potential_temperature" unit="K" grid_ref="full_level_face_grid" operation="once" />
 	<field id="read_dry_rho_in_w3" name="rho" long_name="air_density" unit="1" grid_ref="half_level_face_grid" operation="once" />
+	<field id="read_exner_in_w3" name="exner" long_name="exner_pressure" unit="1" grid_ref="half_level_face_grid" operation="once" />
 	<field id="read_mv_in_wtheta" name="m_v" long_name="humidity_mixing_ratio"  unit="1" grid_ref="full_level_face_grid" operation="once" />
 	<field id="read_mcl_in_wtheta" name="m_cl" long_name="cloud_liquid_water_mixing_ratio"  unit="1" grid_ref="full_level_face_grid" operation="once" />
 	<field id="read_mcf_in_wtheta" name="m_cf" long_name="cloud_ice_mixing_ratio"  unit="1" grid_ref="full_level_face_grid" operation="once" />

rose-stem/app/lfric_atm/file/iodef_ral_ls_and_jedi.xml

@@ -52,6 +52,7 @@
 	<field id="read_upward_wind_in_wtheta" name="upward_wind" long_name="upward_air_velocity" standard_name="upward_air_velocity" unit="m s-1" grid_ref="full_level_face_grid" operation="once" />
 	<field id="read_theta_in_wtheta" name="theta" long_name="air_potential_temperature" standard_name="air_potential_temperature" unit="K" grid_ref="full_level_face_grid" operation="once" />
 	<field id="read_dry_rho_in_w3" name="rho" long_name="air_density" unit="1" grid_ref="half_level_face_grid" operation="once" />
+	<field id="read_exner_in_w3" name="exner" long_name="exner_pressure" unit="1" grid_ref="half_level_face_grid" operation="once" />
 	<field id="read_mv_in_wtheta" name="m_v" long_name="humidity_mixing_ratio"  unit="1" grid_ref="full_level_face_grid" operation="once" />
 	<field id="read_mcl_in_wtheta" name="m_cl" long_name="cloud_liquid_water_mixing_ratio"  unit="1" grid_ref="full_level_face_grid" operation="once" />
 	<field id="read_mcf_in_wtheta" name="m_cf" long_name="cloud_ice_mixing_ratio"  unit="1" grid_ref="full_level_face_grid" operation="once" />

rose-stem/app/lfric_atm/opt/README

@@ -53,9 +53,9 @@ Science settings
 - murk - use single-species aerosol Murk
 - no_aerosol - use no aerosol scheme (fixed cloud drop number)
 - no_dust - don't use interactive dust
-- ral3 - regional configuration
-- ral3_ens - extra config for regional ensembles (including stochastic physics)
-- ral3_scm - single column regional physics (includes convection scheme)
+- ral4 - regional configuration
+- ral4_ens - extra config for regional ensembles (including stochastic physics)
+- ral4_scm - single column regional physics (includes convection scheme)
 - ral_mixmol_opts - extra options for regional models when using the MoL
                     transport scheme and mixed solver configuration
 - ral_opts - extra options for regional models, including LBC blending weights

rose-stem/app/lfric_atm/opt/rose-app-cbl_lem.conf

@@ -164,7 +164,7 @@ partitioner='planar'
 !!microphysics_placement='slow'
 !!orographic_drag_placement='slow'
 !!radiation_placement='slow'
-smagorinsky_placement='fast'
+smagorinsky_placement='outer'
 !!spectral_gwd_placement='slow'
 
 [!!namelist:radiation]

rose-stem/app/lfric_atm/opt/rose-app-melbourne_MG.conf

@@ -13,8 +13,8 @@ aerosols_ancil_path='aerosol_clims/glomap/glomap_clim_n48_v2.ugrid'
 ancil_directory='$BIG_DATA_DIR/ancils/proto-ral/Ticket255/Melbourne/'
 hydtop_ancil_path='hydrol_lsh/hydrosheds/qrparm.hydtop.ugrid'
 land_area_ancil_path='land_sea_mask/qrparm.mask.ugrid.fixed'
-lbc_directory='$BIG_DATA_DIR/lbcs/proto-ral/Ticket255/Melbourne'
-lbc_filename='RAL3P2_alabc_lfric_000_fixedtime'
+lbc_directory='$DATADIR/ral4b1/melbourne'
+lbc_filename='alabc_lfric'
 orography_mean_ancil_path='orography/gmted_ramp2/v2/qrparm.orog.ugrid'
 orography_subgrid_ancil_path='orography/gmted_ramp2/v2/qrparm.orog.ugrid'
 ozone_ancil_path='ozone/sparc/1994-2005/qrclim.ozone_L70_O70.ugrid'
@@ -23,8 +23,8 @@ sea_ancil_path='general_sea/GlobColour/qrclim.sea.ugrid'
 sea_ice_ancil_path='seaice/hadisst_6190/v4/qrclim.seaice.ugrid'
 soil_ancil_path='qrparm.soil_cci.ugrid'
 sst_ancil_path='sst/hadisst_6190/v1/qrclim.sst.ugrid'
-start_dump_directory='$BIG_DATA_DIR/start_dumps/proto-ral/Ticket255/Melbourne'
-start_dump_filename='start_dump'
+start_dump_directory='$DATADIR/ral4b1/melbourne'
+start_dump_filename='astart_lfric'
 surface_frac_ancil_path='qrparm.veg.frac.ugrid'
 
 [namelist:initialization]

rose-stem/app/lfric_atm/opt/rose-app-ral3.conf → rose-stem/app/lfric_atm/opt/rose-app-ral4.conf

@@ -154,7 +154,7 @@ orog_init_option='start_dump'
 !!convection_placement='fast'
 electric_placement='slow'
 !!orographic_drag_placement='slow'
-smagorinsky_placement='fast'
+smagorinsky_placement='outer'
 !!spectral_gwd_placement='slow'
 
 [namelist:radiation]

rose-stem/app/lfric_atm/opt/rose-app-ral_mixmol_opts.conf

@@ -7,18 +7,20 @@ topology='non_periodic'
 blend_frequency='inner'
 blending_weights=7*1.0,0.8,0.6,0.2
 blending_weights_w2v=7*1.0,0.8,0.6,0.2
-lbc_bal_meth='keep_rho'
-lbc_eos_height=10
+lbc_bal_meth='keep_exner_eos_lev'
+lbc_eos_height=0
 lbc_method='onion_layer'
-lbc_sort_theta=.true.
+lbc_sort_theta=.false.
 limited_area=.true.
 normal_only=.true.
 output_lbcs=.true.
 solver_boundary_depth=4
 transport_boundary_depth=7
 
 [namelist:initialization]
-init_eos_height=38
+!!init_eos_height=100
+init_exner_method='dump'
+init_sort_theta=.false.
 read_w2h_wind=.true.
 sst_source='start_dump'
 

rose-stem/app/lfric_atm/opt/rose-app-ral_opts.conf

@@ -7,18 +7,20 @@ topology='non_periodic'
 blend_frequency='inner'
 blending_weights=1.0,1.0,1.0,1.0,0.9,0.7,0.5,0.3,0.1
 blending_weights_w2v=1.0,1.0,1.0,1.0,0.9,0.7,0.5,0.3,0.1
-lbc_bal_meth='keep_rho'
-lbc_eos_height=10
+lbc_bal_meth='keep_exner_eos_lev'
+lbc_eos_height=0
 lbc_method='onion_layer'
-lbc_sort_theta=.true.
+lbc_sort_theta=.false.
 limited_area=.true.
 normal_only=.true.
 output_lbcs=.true.
 solver_boundary_depth=4
 transport_boundary_depth=4
 
 [namelist:initialization]
-init_eos_height=38
+!!init_eos_height=100
+init_exner_method='dump'
+init_sort_theta=.false.
 read_w2h_wind=.true.
 sst_source='start_dump'
 

rose-stem/app/lfric_atm/opt/rose-app-seuk_MG.conf

@@ -9,23 +9,23 @@ file_prefix='mesh_seuk_MG'
 topology='non_periodic'
 
 [namelist:files]
-aerosols_ancil_path='aerosol_clims/glomap/glomap_clim_n48_v2.ugrid'
-ancil_directory='$BIG_DATA_DIR/ancils/proto-ral/Ticket3510/seuk'
+aerosols_ancil_path='aerosol_clims/glomap/qrclim.aerosols_L70_O70.ugrid'
+ancil_directory='$DATADIR/ral4b1/seuk/ancils'
 hydtop_ancil_path='hydrol_lsh/hydrosheds/qrparm.hydtop.ugrid'
-land_area_ancil_path='land_sea_mask/qrparm.mask.ugrid.fixed'
-lbc_directory='$BIG_DATA_DIR/lbcs/proto-ral/Ticket3510/seuk'
-lbc_filename='checkpoint_um2lfric_000001_fixedtime_date'
-orography_mean_ancil_path='orography/gmted_ramp2/qrparm.orog.ugrid'
-orography_subgrid_ancil_path='orography/gmted_ramp2/qrparm.orog.ugrid'
+land_area_ancil_path='land_sea_mask/cci/qrparm.mask.ugrid'
+lbc_directory='$DATADIR/ral4b1/seuk'
+lbc_filename='alabc_lfric'
+orography_mean_ancil_path='orography/SRTM_3arc/v3/qrparm.orog_merged.ugrid'
+orography_subgrid_ancil_path='orography/SRTM_3arc/v3/qrparm.orog_merged.ugrid'
 ozone_ancil_path='ozone/sparc/1994-2005/qrclim.ozone_L70_O70.ugrid'
-plant_func_ancil_path='qrparm.veg.func.ugrid'
+plant_func_ancil_path='vegetation/func_type_modis/qrparm.veg.func.ugrid'
 sea_ancil_path='general_sea/GlobColour/qrclim.sea.ugrid'
-sea_ice_ancil_path='seaice/hadisst_6190/v4/qrclim.seaice.ugrid'
-soil_ancil_path='qrparm.soil_cci.ugrid'
-sst_ancil_path='sst/hadisst_6190/v1/qrclim.sst.ugrid'
-start_dump_directory='$BIG_DATA_DIR/start_dumps/proto-ral/Ticket3510/seuk'
-start_dump_filename='checkpoint_um2lfric_000001'
-surface_frac_ancil_path='qrparm.veg.frac.ugrid'
+sea_ice_ancil_path='sstice/hadisst_6190/qrclim.seaice.ugrid'
+soil_ancil_path='soil_parameters/hwsd_vg/qrparm.soil.ugrid'
+sst_ancil_path='sstice/hadisst_6190/qrclim.sst.ugrid'
+start_dump_directory='$DATADIR/ral4b1/seuk'
+start_dump_filename='astart_lfric'
+surface_frac_ancil_path='vegetation/fractions_cci/qrparm.veg.frac.ugrid'
 
 [namelist:initialization]
 lbc_option='um2lfric_file'

rose-stem/app/lfric_atm/opt/rose-app-uk_672x672_MG.conf

@@ -10,11 +10,11 @@ topology='non_periodic'
 
 [namelist:files]
 aerosols_ancil_path='aerosol_clims/glomap/qrclim.aerosols_L70_O70.ugrid'
-ancil_directory='$BIG_DATA_DIR/ancils/proto-ral/Ticket255/uk_672x672_updated'
+ancil_directory='/data/users/raltrials/ancils/LFRic/UK_672x672_1p5km/lfric'
 hydtop_ancil_path='hydrol_lsh/hydrosheds/qrparm.hydtop.ugrid'
 land_area_ancil_path='land_sea_mask/qrparm.mask.ugrid'
-lbc_directory='$BIG_DATA_DIR/lbcs/proto-ral/Ticket255/uk_672x672'
-lbc_filename='short'
+lbc_directory='$DATADIR/ral4b1/uk_672x672'
+lbc_filename='alabc_lfric'
 orography_mean_ancil_path='orography/globe30/qrparm.orog.ugrid'
 orography_subgrid_ancil_path='orography/globe30/qrparm.orog.ugrid'
 ozone_ancil_path='ozone/undefined/qrclim.ozone_L70_O70.ugrid'
@@ -23,8 +23,8 @@ sea_ancil_path='general_sea/GlobColour/qrclim.sea.ugrid'
 sea_ice_ancil_path='seaice/hadisst_6190/v4/qrclim.seaice.ugrid'
 soil_ancil_path='qrparm.soil_cci.ugrid'
 sst_ancil_path='sst/hadisst_6190/v1/qrclim.sst.ugrid'
-start_dump_directory='$BIG_DATA_DIR/start_dumps/proto-ral/Ticket255/uk_672x672'
-start_dump_filename='RAL3P2_astart_lfric'
+start_dump_directory='$DATADIR/ral4b1/uk_672x672'
+start_dump_filename='astart_lfric'
 surface_frac_ancil_path='qrparm.veg.frac.ugrid'
 
 [namelist:initialization]

rose-stem/app/lfric_atm/opt/rose-app-uk_MG.conf

@@ -13,8 +13,8 @@ aerosols_ancil_path='aerosol_clims/glomap/glomap_clim_n48_v2.ugrid'
 ancil_directory='$BIG_DATA_DIR/ancils/proto-ral/Ticket3510/uk'
 hydtop_ancil_path='hydrol_lsh/hydrosheds/qrparm.hydtop.ugrid'
 land_area_ancil_path='land_sea_mask/qrparm.mask.ugrid.fixed'
-lbc_directory='$BIG_DATA_DIR/lbcs/proto-ral/Ticket3510/uk_new'
-lbc_filename='lbc_fixedtime_000'
+lbc_directory='$DATADIR/ral4b1/uk'
+lbc_filename='alabc_lfric'
 orography_mean_ancil_path='orography/gmted_ramp2/qrparm.orog.ugrid'
 orography_subgrid_ancil_path='orography/gmted_ramp2/qrparm.orog.ugrid'
 ozone_ancil_path='ozone/sparc/1994-2005/qrclim.ozone_L70_O70.ugrid'
@@ -23,8 +23,8 @@ sea_ancil_path='general_sea/GlobColour/qrclim.sea.ugrid'
 sea_ice_ancil_path='seaice/hadisst_6190/v4/qrclim.seaice.ugrid'
 soil_ancil_path='qrparm.soil_cci.ugrid'
 sst_ancil_path='sst/hadisst_6190/v1/qrclim.sst.ugrid'
-start_dump_directory='$BIG_DATA_DIR/start_dumps/proto-ral/Ticket3510/uk_new'
-start_dump_filename='checkpoint_um2lfric_000001'
+start_dump_directory='$DATADIR/ral4b1/uk'
+start_dump_filename='astart_lfric'
 surface_frac_ancil_path='qrparm.veg.frac.ugrid'
 
 [namelist:initialization]

rose-stem/app/lfric_atm/opt/rose-app-ukv_MG.conf

@@ -13,8 +13,8 @@ aerosols_ancil_path='aerosol_clims/glomap/glomap_clim_n48_v2.ugrid'
 ancil_directory='$BIG_DATA_DIR/ancils/proto-ral/Ticket4248/var_uk'
 hydtop_ancil_path='hydrol_lsh/hydrosheds/qrparm.hydtop.ugrid'
 land_area_ancil_path='land_sea_mask/qrparm.mask.ugrid.fixed'
-lbc_directory='$BIG_DATA_DIR/lbcs/proto-ral/Ticket4248/var_uk'
-lbc_filename='lbc_fixedtime_000'
+lbc_directory='$DATADIR/ral4b1/ukv'
+lbc_filename='alabc_lfric'
 orography_mean_ancil_path='orography/gmted_ramp2/qrparm.orog_horizon.ugrid'
 orography_subgrid_ancil_path='orography/gmted_ramp2/qrparm.orog_horizon.ugrid'
 ozone_ancil_path='ozone/sparc/1994-2005/qrclim.ozone_L70_O70.ugrid'
@@ -23,8 +23,8 @@ sea_ancil_path='general_sea/GlobColour/qrclim.sea.ugrid'
 sea_ice_ancil_path='seaice/hadisst_6190/v4/qrclim.seaice.ugrid'
 soil_ancil_path='qrparm.soil_cci.ugrid'
 sst_ancil_path='sst/hadisst_6190/v1/qrclim.sst.ugrid'
-start_dump_directory='$BIG_DATA_DIR/start_dumps/proto-ral/Ticket4248/var_uk'
-start_dump_filename='checkpoint_um2lfric_000001'
+start_dump_directory='$DATADIR/ral4b1/ukv'
+start_dump_filename='astart_lfric'
 surface_frac_ancil_path='qrparm.veg.frac.ugrid'
 
 [namelist:initialization]