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@FBK-NILab @DeepLearningItalia @akaion-ai

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M-ballabio1/README.md

Matteo Ballabio

AI / ML Engineer  ·  Biomedical Engineering  ·  MLOps

I build machine learning that has to survive contact with real clinical data.

Open to AI/ML roles in Switzerland EU citizen, no sponsorship needed Available immediately


About

Biomedical engineer turned AI/ML engineer, with six years across healthcare machine learning, MLOps and cloud-native systems — enterprise consulting at PwC and Capgemini, biotech instrumentation at Tecniplast, and applied research at Fondazione Bruno Kessler and Deep Learning Italia, with three peer-reviewed publications on MLOps and biomedical imaging.

Currently Co-Founder & CTO at Akaion, an AI-native orchestration platform I architected and scaled to 1,250+ users and multiple B2B clients in under a year. Our sovereign execution kernel, Annona, is open source.

I hold an MIT Sloan MicroMasters in AI in Healthcare and completed ETH Zurich's Machine Learning in Health programme. Based in Como, Italy — twenty minutes from the Swiss border.


Current work — Annona

Annona

Stars License Last commit Python

Where an AI workload runs is a decision — and it should be yours, enforced and recorded. Annona is an execution kernel that decides where each step of an agent runs (local, on-premise, or cloud), enforces that decision with a default-deny policy engine, and writes every placement to a hash-chained audit ledger. Local by default, GDPR by design, aligned to the EU AI Act. Apache-2.0, 559 tests, Docker and pip install annona.

It exists because regulated industries — healthcare above all — cannot send data to whichever endpoint a model happens to prefer, and cannot deploy what they cannot audit.

Read the design · Docs · Repository


Tech

Languages

Python Go TypeScript SQL Bash C++

AI & Machine Learning

PyTorch TensorFlow Keras scikit-learn LangChain Claude Gemini pgvector

Cloud & MLOps

GCP Azure Docker GitHub Actions Vercel Linux

Backend & Data

FastAPI Django PostgreSQL Spark Streamlit

Frontend & Devices

React React Native HL7 FHIR Arduino


Featured work

Project What it does Stack
MeHEDI-app Data-driven management platform for a small healthcare facility — full-stack, from data model to dashboard Python · Streamlit
medsync_hl7-FHIR Clinical data interoperability with HL7 and FHIR — the layer that makes health data actually usable Python · FHIR
mlops-api-cell-counting Cell counting served as an API, with the MLOps discipline around it: reproducibility, versioning, monitoring Python · FastAPI · Docker
API-Ultrasound-Classificator Multi-class classification of ultrasound images, exposed as a production API Python · Deep learning
MLODC-Transfer_Learning Multi-label classification in ophthalmology via transfer learning Keras · TensorFlow
go_rest_biomed_tracking REST service for biomedical tracking, written in Go Go · REST
Neuroimaging-Thesis-Project 3D U-Net benchmarks for paediatric brain MRI segmentation — the work behind my thesis and a publication Python · PyTorch

Publications

  • M. Testi, M. Ballabio et al. (2025). MLOps: A Use Case in Biomedical Image Classification. Medical & Biological Engineering & Computing.
  • M. Testi, M. Ballabio et al. (2022). MLOps: A Taxonomy and Methodology. IEEE Access.
  • Amorosino et al. (2021). DBB — Distorted Brain Benchmark. Brainlife.io (contributor).

Google Scholar →


GitHub

Followers Total stars


Contact

LinkedIn Email Google Scholar

Popular repositories Loading

  1. MeHEDI-app MeHEDI-app Public

    Web application for the data-driven management of a small healthcare facility. Proof of Concept of a wider platform project in the Patient Satisfaction area

    Python 30 14

  2. MLODC-Transfer_Learning MLODC-Transfer_Learning Public

    A Keras implementation of Multi Label classification in ophthalmology area

    Jupyter Notebook 6 1

  3. Neuroimaging-Thesis-Project Neuroimaging-Thesis-Project Public

    This repository describes the workflow performed by me during my BSc Biomedical Engineering Thesis

    Python 5

  4. API-Ultrasound-Classificator API-Ultrasound-Classificator Public

    API for multi-class classification of ultrasound images. The JSON response allows to print the probability of each class

    Jupyter Notebook 5

  5. EEFU-MachineLearning_TimeSeries EEFU-MachineLearning_TimeSeries Public

    Statistics project 2 based on the multivariate analysis of a time series dataset

    MATLAB 3

  6. web-app-classificator web-app-classificator Public

    Streamlit UI for interact with API-classificator of ultrasound images.

    Python 3 1