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Lecture Notes

Repository Guide | English | 한국어

Last Updated: 2026-10-18

Unit Topics Documents
Chapter 1 R Programming Basics R and RStudio, the workspace, basic data types and data frames, variables and assignment, vector creation and operations, basic functions, package installation and visualization Lecture notes
Chapter 2 Introduction to Convergence Informatics Definitions of informatics and convergence informatics, data science and data scientists, population and sample, central tendency and dispersion, structured and unstructured data, random variables, feature extraction and selection, overview of supervised and unsupervised learning, medical informatics and pharmacoinformatics Lecture notes
Chapter 3 Unsupervised Learning Clustering vs. classification, similarity and dissimilarity, Manhattan and Euclidean distance, distance matrices and Z-score normalization, Pearson and Spearman correlation, correlation-based distance, hierarchical clustering and linkage methods, K-means clustering Lecture notes
Chapter 4 Dimension Reduction and PCA Curse of dimensionality, feature selection and feature extraction, projection and manifold learning, linear algebra prerequisites, PCA objectives and derivation with Lagrange multipliers, eigenvalues and eigenvectors of the covariance matrix, MDS, t-SNE, UMAP, scree plots and explained variance ratio Lecture notes
Chapter 5 Modeling Deterministic and probabilistic models, regression models and variable types, the population linear regression model and error assumptions, least squares estimation and OLS formulas, multiple linear regression, correlation vs. regression, a diet data prediction example Lecture notes
Chapter 6 Supervised Learning Classification and prediction, the general classification process, training and test sets, overfitting and underfitting, LOOCV and K-fold cross-validation, bias-variance trade-off, model performance metrics, K-nearest neighbors Lecture notes