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test: trigger notebook sync pipeline with 10.2_Cluster_By_Embedding - #15

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ChanceChallacombe merged 1 commit into
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test/trigger-notebook-sync-10-2
Apr 29, 2026
Merged

ChanceChallacombe merged 1 commit into
mainfrom
test/trigger-notebook-sync-10-2

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@ChanceChallacombe

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Purpose

Smoke test for the new cross-repo notebook sync automation.

Merging this PR should:

  1. Trigger notify-notebook-sync.yml (detects content/10.2_Cluster_By_Embedding.ipynb as added)
  2. Fire repository_dispatch → BioLM/biolm_web with event-type: notebook-sync
  3. handle-notebook-sync.yml runs in biolm_web:
    • Converts the notebook to self-contained HTML → jupyter_html/
    • Generates ui/migrations/XXXX_load_synced_jupyter_pages.py
    • Opens a bot PR on biolm_web

What to verify after merge

  • notify-notebook-sync.yml run appears in Actions tab — shows notebook detected, dispatch fired
  • Bot PR appears on BioLM/biolm_web with branch bot/notebook-sync-<sha>
  • Bot PR contains jupyter_html/10.2_Cluster_By_Embedding.html and a new ui/migrations/ file

Notebook

10.2_Cluster_By_Embedding.ipynb — ESM2 embedding-based K-means clustering and PCA visualization (from the pd-14-pipeline-notebooks series, tested locally end-to-end).

@ChanceChallacombe
ChanceChallacombe merged commit ce690d5 into main Apr 29, 2026
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@ChanceChallacombe
ChanceChallacombe deleted the test/trigger-notebook-sync-10-2 branch April 29, 2026 00:33
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