Feat/skill management - #24

Merged

aarontuor merged 53 commits into

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feat/skill-management

Jul 8, 2026

Commits on Jun 24, 2026

feat(skills): external skill catalogs, native discovery, skill-creator

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365f962
fix(skills): persist CLI-added sources to config; demo prompt script

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b6e5598
docs(skills): demo rebuild block must sync the catalog

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a049992
feat(skills): clarify catalog discovery and install signals

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752b959
chore(release): 0.2.0 with single-sourced version

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6af5d0b
docs: add pip-from-github install, sync README/docs, build on uv

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f7fc77c
refactor(skills,mcp): merge MCP servers into one dsagt-server; SkillsCatalog + keyword fallback

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4b81e43
chore(release): 0.3.0 — single dsagt-server + catalog-only skill discovery

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95a49fa
docs: single dsagt-server sweep + skill-routing figure in Tools & Skills

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8030e7a
fix(cli): implement `dsagt --version` (single-sourced from __version__)

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433bab6
feat(skills): source-qualified catalog install to disambiguate cross-source name clashes

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docs(changelog): note source-qualified install + dsagt --version under 0.3.0

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d7fda87
docs: mention skills discovery/creation in the README tagline

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c5c1bd2
refactor(mcp,skills): split the MCP server into a concern-based mcp/ package; consolidate skill modules into skills.py

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acb4dde
fix(skills): recover catalog skills with technically-invalid YAML frontmatter

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c30ba80
chore(release): 0.2.0 — external skill catalogs + single dsagt-server

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1bbc7ff

Commits on Jun 29, 2026

feat: proxy-free trace pipeline + episodic memory (Phase 2/3)

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a31a413

Commits on Jul 2, 2026

refactor: rename data-processing "tools" → "codes"; reserve "tool" for MCP

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34caf5d
docs: split into per-capability pages; lead with interactive `dsagt init`

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ad35b08
Merge remote-tracking branch 'origin/main' into feat/skill-management
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17a8ad0
test: update kb_search handler assertions for where_document param

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68935e7
test: close http_request coverage gap, drop 20s of wall-clock, fix mlflow deprecation

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650d2b2
test: remove unused imports (ruff F401/F811)

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bc3f581
test(smoke): two-session overhaul — full capability coverage, stale OTel/csvtool era removed

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29d459b
fix(traces): CodexReader reads the per-project CODEX_HOME; smoke hardening from the 4-agent sweep

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c040bdd
docs(registry): record why provenance is baked into the shell command

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5162c8d
feat(registry): codes are skill-standard dirs, mirrored into agent native skills

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3021a91
fix(cline): dsagt never touches cline auth; fix mcp add for cline 3.x

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bad36fd
docs: refresh agent-card.md to v0.2.0 reality; fix stale agent instructions

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8794863
refactor(agents): agents are pre-authenticated — remove all credential hint machinery

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9b1fc67
docs(codes): record why the bundled script lives beside its spec dir

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8d17ba9
docs(cline): batch blocker is now MCP-less headless CLI, not the model whitelist

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docs(cline): correct the headless-MCP finding — servers spawn, tools never bridge

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7c21001
feat(registry): bundled codes copied into <project>/codes/ — one place, one format

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feat(cline): per-project MCP config via CLINE_MCP_SETTINGS_PATH — global auth + settings untouched

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ece3a95
docs(use_cases): current-dsagt stale sweep + estimated-time headers

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d70706e
docs(use_cases): remove redundant microbial_isolates/demoplan.md

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8ce6624
docs: code terminology on the use-case site pages; drop stale isolate transcript

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30f8e10

Commits on Jul 3, 2026

docs: replace csvkit quickstart demo with a stdlib csv_summary code

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0463ac1
fix(observability): tag background trace spans + add dsagt traces viewer

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0743207

Commits on Jul 6, 2026

feat(skills): mirror skills/codes natively at install time; temper restart messaging

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f4fe4f6
docs(use_cases): restructure genesis-skills walkthrough

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dd9f861
feat(cli): unlisted `dsagt mlflow` alias for `dsagt traces`

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528b5fc
docs(changelog): summarize the unreleased cycle

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a31d1bc
docs(kb): replace phantom knowledge/ folder with a user-chosen placeholder

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48553f1

Commits on Jul 8, 2026

fix(kb): ingest nemo_curator/aidrin docs+papers only, not source

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fd81d7b
docs(agent-card): fix frontmatter nesting and refresh stale facts

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236c917
docs(use-cases): auto-generate table/pages from use_cases frontmatter

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c66cffd
build: cap numpy<2.0 on Intel Mac via PEP 508 markers, not uv constraints

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aaae1a2
docs: de-duplicate via shared includes, rename skill catalog→corpus, de-jargon

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717a511
fix: address code-review findings (crashes, path traversal, pipeline stalls)

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669d62a
refactor: remove dead code, fix stale refs, align code_use naming

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7f7d9f2
chore(release): 0.2.0

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a7833a8