From cef54c07bba9a405ad32ff3075b7cf67dc0a6d3b Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 7 Sep 2026 22:43:58 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
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updates:
- [github.com/astral-sh/ruff-pre-commit: v0.16.2 → v0.16.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.16.2...v0.16.6)
- [github.com/pycqa/isort: 9.0.0b2 → 9.0.1](https://github.com/pycqa/isort/compare/9.0.0b2...9.0.1)
---
 .pre-commit-config.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index c032c8a69..ef8dbb272 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -10,7 +10,7 @@ ci:
 repos:
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.16.2
+  rev: v0.16.6
   hooks:
     # Run the linter.
     - id: ruff
@@ -26,7 +26,7 @@ repos:
       exclude: 'setup.cfg|gmso/tests/files/.*'
 
 - repo: https://github.com/pycqa/isort
-  rev: 9.0.0b2
+  rev: 9.0.1
   hooks:
     - id: isort
       name: isort (python)

From ed6e2f6507d5e81fe0ead35205f97605665e1e01 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 7 Sep 2026 22:46:03 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks for
 more information, see https://pre-commit.ci

---
 README.md | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index 5dff7eae4..2ea00d60a 100644
--- a/README.md
+++ b/README.md
@@ -22,16 +22,15 @@ from mbuild.lib.molecules import Ethane
 from gmso.external.convert_mbuild import from_mbuild
 from gmso.parameterization import apply
 from gmso.formats.lammpsdata import write_lammpsdata
+
 # Start with a mBuild compound
 mb_ethane = Ethane()
-oplsaa = ffutils.FoyerFFs().load('oplsaa').to_gmso_ff()
+oplsaa = ffutils.FoyerFFs().load("oplsaa").to_gmso_ff()
 # atomtype the system with foyer, and convert the resulting structure to a topology
 gmso_ethane = from_mbuild(mb_ethane)
-apply(top=gmso_ethane,
-      forcefields=oplsaa,
-      identify_connections=True)
+apply(top=gmso_ethane, forcefields=oplsaa, identify_connections=True)
 # Write out lammps datafile
-write_lammpsdata(gmso_ethane, filename='ethane.lammps', atom_style='full')
+write_lammpsdata(gmso_ethane, filename="ethane.lammps", atom_style="full")
 ```
 
 Introduction