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- | Implementing a YOLACT-Style Model for Real-Time Instance Segmentation in Piximi |
+ Implementing a native, trainable, instance segmentation model Piximi |
- Piximi will feature an integrated, YOLACT-style instance segmentation model capable of running entirely in the browser, giving users a fast, secure, and open-source alternative to existing bioimage analysis tools.
+ Piximi will feature an integrated instance segmentation model capable of being fine-tuned and used for inference entirely in the browser, giving users a fast, secure, and open-source alternative to existing bioimage analysis segmentation tools.
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Large |
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This project will focus on:
- - Developing and fine-tuning a YOLACT-style model (You Only Look At Coefficients) for biological image segmentation.
+ - Developing a lightweight YOLACT-style (You Only Look At Coefficients) model for biological image segmentation.
- Pretraining the model using high-quality biological datasets to ensure accurate and robust segmentation results.
- - Optimizing and porting the model to JavaScript, enabling fast, client-side inference in Piximi without requiring a backend server.
+ - Optimizing and porting the model to JavaScript, enabling fast, client-side fine tuning and inference in Piximi without requiring a backend server.
This will allow seamless, on-device segmentation, ensuring privacy, speed, and accessibility for users analyzing bioimages.
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N/A |
- While Piximi provides an intuitive browser-based interface, many researchers and data scientists prefer working within Jupyter notebooks for interactive data exploration and analysis.
+ While Piximi provides an intuitive browser-based interface, many researchers and data scientists prefer working within computational notebooks for interactive data exploration and analysis.
- This project will enable Piximi’s functionality within Jupyter notebooks by:
+ This project will enable Piximi’s functionality within computational notebooks (e.g. Jupyter, marimo, Google Colab, VS Code, etc.) by:
- - Building an API for use with AnyWidget, allowing Jupyter users to access Piximi’s tools.
- - Connecting Piximi’s Redux state to the API, ensuring seamless interaction between the Jupyter frontend and Piximi’s image-processing capabilities.
- - Providing a smooth user experience, enabling users to upload images, annotate, classify, and measure them—all from a Jupyter notebook.
+ - Building an AFM (Anywidget Front-End Module) compliant API, allowing notebook users to access Piximi's tools.
+ - Connecting Piximi’s Redux state to the API, ensuring seamless interaction between the notebook frontend and Piximi’s image-processing capabilities.
+ - Providing a smooth user experience, enabling users to upload images, annotate, segment, classify, and measure them—all from a notebook environment.
This integration will expand Piximi’s accessibility and make it easier for researchers to incorporate Piximi into their Python-based workflows.
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