From d4f0aefb0604b8f5a86f6f2c417304791794da7f Mon Sep 17 00:00:00 2001
From: mikessh <mikhail.shugay@gmail.com>
Date: Thu, 11 Jun 2026 12:54:09 +0300
Subject: [PATCH] Add .zenodo.json metadata

Bump to retry failed Zenodo DOI assignment (empty error message,
known Zenodo issue slated for fix in their 2026 roadmap).

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
---
 .zenodo.json | 44 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)
 create mode 100644 .zenodo.json

diff --git a/.zenodo.json b/.zenodo.json
new file mode 100644
index 0000000..869d5e8
--- /dev/null
+++ b/.zenodo.json
@@ -0,0 +1,44 @@
+{
+    "title": "VDJdb: a curated database of T-cell receptor sequences with known antigen specificity",
+    "description": "<p>VDJdb is a curated database of T-cell receptor (TCR) sequences with known antigen specificity, i.e. the ability to recognize certain epitopes in certain MHC contexts. Its primary goal is to facilitate access to existing information on TCR antigen specificities by aggregating the scarce TCR specificity data available and curating it into a consistent, validated repository.</p><p>Each record is assigned a single confidence score based on the experimental setup used to identify the antigen-specific TCR, and is automatically checked against a database of V/J germline sequences to ensure standardized reporting of V-J junctions and CDR3 sequences. This repository hosts the submissions to the database and the scripts used to check, fix and build the database.</p><p>The database can be queried via the <a href=\"https://github.com/antigenomics/vdjmatch\">vdjmatch</a> software, browsed using the <a href=\"https://github.com/antigenomics/vdjdb-web\">VDJdb-web</a> GUI, and accessed online at <a href=\"https://vdjdb.com\">https://vdjdb.com</a>.</p>",
+    "upload_type": "dataset",
+    "access_right": "open",
+    "license": "AGPL-3.0-only",
+    "language": "eng",
+    "keywords": [
+        "T-cell receptor",
+        "TCR",
+        "antigen specificity",
+        "epitope",
+        "MHC",
+        "CDR3",
+        "immunogenomics",
+        "adaptive immunity",
+        "immunology",
+        "curated database"
+    ],
+    "creators": [
+        { "name": "Shugay, Mikhail", "orcid": "0000-0001-7826-7942", "affiliation": "ISALGO laboratory (isalgo.dev)" },
+        { "name": "ISALGO laboratory", "affiliation": "isalgo.dev" }
+    ],
+    "related_identifiers": [
+        {
+            "identifier": "10.1038/s41592-022-01578-0",
+            "relation": "isSupplementTo",
+            "resource_type": "publication-article",
+            "scheme": "doi"
+        },
+        {
+            "identifier": "https://github.com/antigenomics/vdjdb-db",
+            "relation": "isSupplementTo",
+            "resource_type": "software",
+            "scheme": "url"
+        },
+        {
+            "identifier": "https://vdjdb.com",
+            "relation": "isIdenticalTo",
+            "resource_type": "dataset",
+            "scheme": "url"
+        }
+    ]
+}