From 3b8dfa1a586449eec48abd8e0444f2f981aff11f Mon Sep 17 00:00:00 2001 From: mikessh Date: Mon, 1 Jun 2026 08:21:49 +0300 Subject: [PATCH 1/2] Move frequency guidance into proofread skill --- skills/vdjdb-proofread/SKILL.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/skills/vdjdb-proofread/SKILL.md b/skills/vdjdb-proofread/SKILL.md index cbbe4f1..88e7588 100644 --- a/skills/vdjdb-proofread/SKILL.md +++ b/skills/vdjdb-proofread/SKILL.md @@ -387,7 +387,7 @@ Document any data quality problem that `ChunkQC.py` does NOT currently detect. U | # | Resolution date | Details | |---|---|---| | 13 | June 2026 | Combined HLA α/β collapses (e.g., `HLA-DQA1*01:02/DQB1*06:02`) detected in 628 rows across 4 files (PMID_30541895, PMID_33837283, PMID_35675811, small_datasets_2026-05-29). Split using regex `r'^(HLA-\S+?)/([A-Z]\S+)$'`: mhc.a = part before slash, mhc.b = `HLA-` + part after slash. **✅ FULLY RESOLVED** | -| 14 | In progress | Percentage-format frequencies (e.g., `36.1%`) identified in 36 files; flagged as likely group-level statistics when identical across all clones of one epitope. Not auto-fixed (requires editorial decision to move to `meta.subset.frequency` or blank). See `MHC_BLANK_RESOLUTION_REPORT.md` for details | +| 14 | In progress | Percentage-format frequencies (e.g., `36.1%`) identified in 36 files; flag them as likely group-level statistics when identical across all clones of one epitope. Do not auto-convert to `N/M` unless the denominator is known. If the same percentage repeats for all clones of an epitope, move it to `meta.subset.frequency` and blank `method.frequency`; if it varies per clone from a sequencing experiment, keep the curation note and resolve from the source paper when possible. | | 15 | June 2026 | Blank mhc.a/mhc.b audit: implemented pre/post-proofread checks. Mouse MHCII blanks resolved (150 rows). Human MHCII blanks resolved (1048 rows total: 153 DRB→HLA-DRA*01:01 fill, 467 DP pairs from PubMed-validated canonical pairings, 428 DQ pairs from narcolepsy literature). **✅ FULLY RESOLVED** | | 16 | June 2026 | Mouse MHCII self-fill rule applied to 150 rows; validator confirmed all resolved. **✅ FULLY RESOLVED** | From 1432e2ebad6adda6bf7e02f1bdaa3fe5394bffcb Mon Sep 17 00:00:00 2001 From: mikessh Date: Mon, 1 Jun 2026 08:30:36 +0300 Subject: [PATCH 2/2] fix --- chunks/PMID_12466894.txt | 2 +- chunks/PMID_15889096.txt | 136 +++++++++++++++++++-------------------- 2 files changed, 69 insertions(+), 69 deletions(-) diff --git a/chunks/PMID_12466894.txt b/chunks/PMID_12466894.txt index 5924058..ddb61c2 100644 --- a/chunks/PMID_12466894.txt +++ b/chunks/PMID_12466894.txt @@ -92,4 +92,4 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a 91 CASSGSPGQGAEYF TRBV6-5 TRBJ2-7 HomoSapiens HLA-DRA*01 HLA-DRB1*01 MHCII PKYVKQNTLKLAT HA InfluenzaA PMID:12466894 tetramer-sort 1/73 sanger CD4+ SL SL-33 PBMC HLA-DR1 92 CATSAGGAEPTDTQYF TRBV24-1 TRBJ2-3 HomoSapiens HLA-DRA*01 HLA-DRB1*01 MHCII PKYVKQNTLKLAT HA InfluenzaA PMID:12466894 tetramer-sort 1/73 sanger CD4+ SL SL-34 PBMC HLA-DR1 93 CASSWRGGIQGVAGELFF TRBV13 TRBJ2-2 HomoSapiens HLA-DRA*01 HLA-DRB1*01 MHCII PKYVKQNTLKLAT HA InfluenzaA PMID:12466894 tetramer-sort 2/73 sanger CD4+ SL SL-35 PBMC HLA-DR1 -94 CASSWPEWEGELFF TRBV1 TRBJ2-2 HomoSapiens HLA-DRB1*01:01 HLA-DRA*01:01 MHCII PKYVKQNTLKLAT HA InfluenzaA PMID:12466894 tetramer-sort WL1-7 +94 CASSWPEWEGELFF TRBV1 TRBJ2-2 HomoSapiens HLA-DRA*01:01 HLA-DRB1*01:01 MHCII PKYVKQNTLKLAT HA InfluenzaA PMID:12466894 tetramer-sort WL1-7 diff --git a/chunks/PMID_15889096.txt b/chunks/PMID_15889096.txt index cf458df..0ff022b 100644 --- a/chunks/PMID_15889096.txt +++ b/chunks/PMID_15889096.txt @@ -1,69 +1,69 @@ chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a mhc.b mhc.class antigen.epitope antigen.gene antigen.species reference.id method.identification method.frequency method.singlecell method.sequencing method.verification meta.study.id meta.cell.subset meta.subset.frequency meta.subject.cohort meta.subject.id meta.replica.id meta.clone.id meta.epitope.id meta.tissue meta.donor.MHC meta.donor.MHC.method meta.structure.id -1 CASSLATSGGGSDTQYF TRBV5-1*02 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -2 CASSPWTGIPDNSPLHF TRBV5-1*02 TRBJ1-6*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -3 CASSLEVPFNSPLHF TRBV5-1*02 TRBJ1-6*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -4 CASNLQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -5 CASSLGQETYNSPLHF TRBV5-1*01 TRBJ1-6*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -6 CASSLDGRGGTYQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -7 CASSLDGRGGTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -8 CASSEGSGANVLTF TRBV5-1*01 TRBJ2-6*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -9 CASSSPQAREETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -10 CASSLQGTGGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -11 CASSWGQGANYGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -12 CASRWAQGAGELFF TRBV5-1*01 TRBJ2-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -13 CASSSQGDYGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -14 CASSLGGGNQPQHF TRBV5-1*01 TRBJ1-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -15 CASSLSGTSVYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -16 CASSLWGQGGYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -17 CASSSQGDTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -18 CASSLVEAGGYNEQFF TRBV5-1*01 TRBJ2-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -19 CASSLSAGGTNTGELFF TRBV5-1*01 TRBJ2-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -20 CASSYRDLTDTQYF TRBV5-1*02 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -21 CASSILDGRNTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -22 CASSESEQGSSYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -23 CASSRDGRSYEQYF TRBV5-1*02 TRBJ2-7*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -24 CASSLVGGSGNTIYF TRBV5-1*01 TRBJ1-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -25 CASSLDSGELFF TRBV5-1*02 TRBJ2-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -26 CASSRTGTASFRGATEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -27 CASSSRGGPIQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -28 CASSVGQANTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -29 CASSLGTRGEETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -30 CASSLWHQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -31 CASSQTGTTDSPLHF TRBV5-1*01 TRBJ1-6*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -32 CASSLVGDSTEAFF TRBV5-1*02 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -33 CASSLASGQETQYF TRBV5-1*02 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -34 CASSWRGTGDPNTGELFF TRBV5-1*01 TRBJ2-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -35 CASSLAGGTMNTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -36 CASRLPGLADTGELFF TRBV5-1*02 TRBJ2-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -37 CASSLEGGLSYTF TRBV5-1*02 TRBJ1-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -38 CASSLVVGKSDEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -39 CASSLDSYNEKLFF TRBV5-1*01 TRBJ1-4*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -40 CASSLGQEQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -41 CASSLRGLPYNSPLHF TRBV5-1*01 TRBJ1-6*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -42 CASSLVQGNNEQYF TRBV5-1*02 TRBJ2-7*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -43 CASSPAWGTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -44 CASLTAPIGGGTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -45 CASSLIQLSKDTQYF TRBV5-1*02 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -46 CASSLRTNSYNEQFF TRBV5-1*01 TRBJ2-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -47 CASSFAGASYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -48 CASSLEAATGGRYGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -49 CASSLDGDYGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -50 CASSSQGSSYNSPLHF TRBV5-1*02 TRBJ1-6*02 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -51 CASIPTSGKTQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -52 CASSLAGTARGDGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -53 CASSLTSGGQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -54 CASSWAGTGPTEAFF TRBV5-1*02 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -55 CASSSGTGNTEAFF TRBV5-1*02 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -56 CASSLGAGSTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -57 CASSFERTQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -58 CASSLAGQPNNEQFF TRBV5-1*01 TRBJ2-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -59 CASSLGDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -60 CASSLAFGGGEQETQYF TRBV5-1*02 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -61 CASSLDGGTGNTIYF TRBV5-1*01 TRBJ1-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -62 CASSLEGVLGGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -63 CASSSTGRTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -64 CASRTSESGANVLTF TRBV5-1*02 TRBJ2-6*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -65 CASSSGDRWPYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -66 CASSLEGRTASTDTQYF TRBV5-1*02 TRBJ2-3*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -67 CASSFGDGNTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets -68 CASSLGDGGAGLETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRB1*04:01 HLA-DRA*01:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +1 CASSLATSGGGSDTQYF TRBV5-1*02 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +2 CASSPWTGIPDNSPLHF TRBV5-1*02 TRBJ1-6*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +3 CASSLEVPFNSPLHF TRBV5-1*02 TRBJ1-6*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +4 CASNLQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +5 CASSLGQETYNSPLHF TRBV5-1*01 TRBJ1-6*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +6 CASSLDGRGGTYQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +7 CASSLDGRGGTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +8 CASSEGSGANVLTF TRBV5-1*01 TRBJ2-6*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +9 CASSSPQAREETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +10 CASSLQGTGGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +11 CASSWGQGANYGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +12 CASRWAQGAGELFF TRBV5-1*01 TRBJ2-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +13 CASSSQGDYGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +14 CASSLGGGNQPQHF TRBV5-1*01 TRBJ1-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +15 CASSLSGTSVYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +16 CASSLWGQGGYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +17 CASSSQGDTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +18 CASSLVEAGGYNEQFF TRBV5-1*01 TRBJ2-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +19 CASSLSAGGTNTGELFF TRBV5-1*01 TRBJ2-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +20 CASSYRDLTDTQYF TRBV5-1*02 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +21 CASSILDGRNTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +22 CASSESEQGSSYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +23 CASSRDGRSYEQYF TRBV5-1*02 TRBJ2-7*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +24 CASSLVGGSGNTIYF TRBV5-1*01 TRBJ1-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +25 CASSLDSGELFF TRBV5-1*02 TRBJ2-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +26 CASSRTGTASFRGATEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +27 CASSSRGGPIQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +28 CASSVGQANTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +29 CASSLGTRGEETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +30 CASSLWHQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +31 CASSQTGTTDSPLHF TRBV5-1*01 TRBJ1-6*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +32 CASSLVGDSTEAFF TRBV5-1*02 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +33 CASSLASGQETQYF TRBV5-1*02 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +34 CASSWRGTGDPNTGELFF TRBV5-1*01 TRBJ2-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +35 CASSLAGGTMNTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +36 CASRLPGLADTGELFF TRBV5-1*02 TRBJ2-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +37 CASSLEGGLSYTF TRBV5-1*02 TRBJ1-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +38 CASSLVVGKSDEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +39 CASSLDSYNEKLFF TRBV5-1*01 TRBJ1-4*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +40 CASSLGQEQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +41 CASSLRGLPYNSPLHF TRBV5-1*01 TRBJ1-6*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +42 CASSLVQGNNEQYF TRBV5-1*02 TRBJ2-7*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +43 CASSPAWGTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +44 CASLTAPIGGGTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +45 CASSLIQLSKDTQYF TRBV5-1*02 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +46 CASSLRTNSYNEQFF TRBV5-1*01 TRBJ2-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +47 CASSFAGASYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +48 CASSLEAATGGRYGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +49 CASSLDGDYGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +50 CASSSQGSSYNSPLHF TRBV5-1*02 TRBJ1-6*02 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +51 CASIPTSGKTQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +52 CASSLAGTARGDGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +53 CASSLTSGGQETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +54 CASSWAGTGPTEAFF TRBV5-1*02 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +55 CASSSGTGNTEAFF TRBV5-1*02 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +56 CASSLGAGSTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +57 CASSFERTQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +58 CASSLAGQPNNEQFF TRBV5-1*01 TRBJ2-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +59 CASSLGDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +60 CASSLAFGGGEQETQYF TRBV5-1*02 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +61 CASSLDGGTGNTIYF TRBV5-1*01 TRBJ1-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +62 CASSLEGVLGGYTF TRBV5-1*01 TRBJ1-2*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +63 CASSSTGRTDTQYF TRBV5-1*01 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +64 CASRTSESGANVLTF TRBV5-1*02 TRBJ2-6*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +65 CASSSGDRWPYEQYF TRBV5-1*01 TRBJ2-7*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +66 CASSLEGRTASTDTQYF TRBV5-1*02 TRBJ2-3*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +67 CASSFGDGNTEAFF TRBV5-1*01 TRBJ1-1*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets +68 CASSLGDGGAGLETQYF TRBV5-1*01 TRBJ2-5*01 HomoSapiens HLA-DRA*01:01 HLA-DRB1*04:01 MHCII GIVEQCCTSICSLYQ INS HomoSapiens PMID:15889096 antigen-loaded-targets