From 884eb92c89078a40a90ee1aa49b124e1d2263cf7 Mon Sep 17 00:00:00 2001 From: Kelly Sovacool Date: Wed, 29 Oct 2025 11:16:37 -0400 Subject: [PATCH 1/3] chore: bump dev version --- DESCRIPTION | 2 +- NEWS.md | 2 ++ 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 23bdeeeb..69a8d472 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: mikropml Title: User-Friendly R Package for Supervised Machine Learning Pipelines -Version: 1.7.0 +Version: 1.7.0.9000 Authors@R: c( person("Begüm", "Topçuoğlu", , "topcuoglu.begum@gmail.com", role = "aut", comment = c(ORCID = "0000-0003-3140-537X")), diff --git a/NEWS.md b/NEWS.md index c5335507..338addba 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,5 @@ +# mikropml development version + # mikropml 1.7.0 - mikropml now supports datasets in `TreeSummarizedExperiment` format (#349, @TuomasBorman). From 6e652a0a7e5cb693435f690a4726fe26e57714e4 Mon Sep 17 00:00:00 2001 From: Kelly Sovacool Date: Wed, 29 Oct 2025 12:07:35 -0400 Subject: [PATCH 2/3] docs: add r-universe --- README.Rmd | 17 +++++++++++++---- README.md | 15 ++++++++++++--- 2 files changed, 25 insertions(+), 7 deletions(-) diff --git a/README.Rmd b/README.Rmd index 118be940..aad368f9 100644 --- a/README.Rmd +++ b/README.Rmd @@ -25,6 +25,7 @@ User-Friendly R Package for Supervised Machine Learning Pipelines [![codecov](https://codecov.io/gh/SchlossLab/mikropml/branch/main/graph/badge.svg)](https://app.codecov.io/gh/SchlossLab/mikropml) [![license](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/SchlossLab/mikropml/blob/main/LICENSE.md) [![CRAN](https://img.shields.io/cran/v/mikropml?color=blue&label=CRAN&logo=R)](https://CRAN.R-project.org/package=mikropml) +[![r-universe](https://schlosslab.r-universe.dev/mikropml/badges/version)](https://schlosslab.r-universe.dev/mikropml) [![Conda](https://img.shields.io/conda/vn/conda-forge/r-mikropml)](https://anaconda.org/conda-forge/r-mikropml) [![DOI](https://joss.theoj.org/papers/10.21105/joss.03073/status.svg)](https://doi.org/10.21105/joss.03073) @@ -39,6 +40,8 @@ documentation, and examples. ## Installation +### CRAN + You can install the latest release from [CRAN](https://cran.r-project.org/package=mikropml): @@ -47,12 +50,19 @@ You can install the latest release from install.packages('mikropml') ``` -or the development version from +or from [r-universe](https://schlosslab.r-universe.dev/mikropml): + + +```{r install_universe, eval = FALSE} +install.packages('mikropml', repos = c('https://schlosslab.r-universe.dev')) +``` + +or install the development version from [GitHub](https://github.com/SchlossLab/mikRopML): ```{r install_github, eval = FALSE} -# install.packages("devtools") -devtools::install_github("SchlossLab/mikropml") +# install.packages("remotes") +remotes::install_github("SchlossLab/mikropml") ``` or install from a terminal using @@ -64,7 +74,6 @@ or [mamba](https://mamba.readthedocs.io/en/latest/): mamba install -c conda-forge r-mikropml ``` - ### Dependencies ```{r deps, echo = FALSE, message = FALSE, warning = FALSE} diff --git a/README.md b/README.md index 9f1ee21c..782b30b2 100644 --- a/README.md +++ b/README.md @@ -13,6 +13,7 @@ User-Friendly R Package for Supervised Machine Learning Pipelines [![codecov](https://codecov.io/gh/SchlossLab/mikropml/branch/main/graph/badge.svg)](https://app.codecov.io/gh/SchlossLab/mikropml) [![license](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/SchlossLab/mikropml/blob/main/LICENSE.md) [![CRAN](https://img.shields.io/cran/v/mikropml?color=blue&label=CRAN&logo=R)](https://CRAN.R-project.org/package=mikropml) +[![r-universe](https://schlosslab.r-universe.dev/mikropml/badges/version)](https://schlosslab.r-universe.dev/mikropml) [![Conda](https://img.shields.io/conda/vn/conda-forge/r-mikropml)](https://anaconda.org/conda-forge/r-mikropml) [![DOI](https://joss.theoj.org/papers/10.21105/joss.03073/status.svg)](https://doi.org/10.21105/joss.03073) @@ -27,6 +28,8 @@ information, documentation, and examples. ## Installation +### CRAN + You can install the latest release from [CRAN](https://cran.r-project.org/package=mikropml): @@ -35,12 +38,18 @@ You can install the latest release from install.packages('mikropml') ``` -or the development version from +or from [r-universe](https://schlosslab.r-universe.dev/mikropml): + +``` r +install.packages('mikropml', repos = c('https://schlosslab.r-universe.dev')) +``` + +or install the development version from [GitHub](https://github.com/SchlossLab/mikRopML): ``` r -# install.packages("devtools") -devtools::install_github("SchlossLab/mikropml") +# install.packages("remotes") +remotes::install_github("SchlossLab/mikropml") ``` or install from a terminal using From 2ebdb12d571ddc95ecb678a1a8b3599378c790f8 Mon Sep 17 00:00:00 2001 From: "Kelly Sovacool, PhD" Date: Thu, 30 Oct 2025 14:03:08 -0400 Subject: [PATCH 3/3] style: remove CRAN subsection header --- README.Rmd | 2 -- 1 file changed, 2 deletions(-) diff --git a/README.Rmd b/README.Rmd index aad368f9..52b0956d 100644 --- a/README.Rmd +++ b/README.Rmd @@ -40,8 +40,6 @@ documentation, and examples. ## Installation -### CRAN - You can install the latest release from [CRAN](https://cran.r-project.org/package=mikropml):